Results 41 - 60 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6840 | 5' | -59.8 | NC_001875.2 | + | 62225 | 0.71 | 0.403862 |
Target: 5'- cCUCGCGCGCCAacaGCACGuuuugaccaaacGCAguguccGGGUc -3' miRNA: 3'- uGAGCGCGCGGUg--CGUGU------------CGUa-----CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 18665 | 0.72 | 0.347261 |
Target: 5'- ---aGCGCGUCACgGUGCGGCugcUGGGCg -3' miRNA: 3'- ugagCGCGCGGUG-CGUGUCGu--ACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 12672 | 0.77 | 0.166092 |
Target: 5'- --aCGCGCGCCGCGUuggccgggugugGCGGCAaaauguuaUGGGCg -3' miRNA: 3'- ugaGCGCGCGGUGCG------------UGUCGU--------ACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 100873 | 0.71 | 0.395426 |
Target: 5'- aGCgCGagGCGCaGCGCGC-GCGUGGGCg -3' miRNA: 3'- -UGaGCg-CGCGgUGCGUGuCGUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 23997 | 0.78 | 0.153993 |
Target: 5'- aACUCGCGCGCguCGCAaGGCGcaccGGGCg -3' miRNA: 3'- -UGAGCGCGCGguGCGUgUCGUa---CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 97515 | 0.69 | 0.522883 |
Target: 5'- uCUCGUGCGUUuCGUcuuCGGgGUGGGCg -3' miRNA: 3'- uGAGCGCGCGGuGCGu--GUCgUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 95217 | 0.75 | 0.223355 |
Target: 5'- aGCUCGUGUGCCGCGaucgguGguGCAaGGGCg -3' miRNA: 3'- -UGAGCGCGCGGUGCg-----UguCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 91627 | 0.69 | 0.503581 |
Target: 5'- aAUUUGCuGCGCCGaauagcCGCGCAGCAgcuGGCc -3' miRNA: 3'- -UGAGCG-CGCGGU------GCGUGUCGUac-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 35000 | 0.69 | 0.49785 |
Target: 5'- --gCGCGCGCCgucaaacaaggcGCGCauaacguccagcuugACGGCGcUGGGCa -3' miRNA: 3'- ugaGCGCGCGG------------UGCG---------------UGUCGU-ACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 65224 | 0.7 | 0.47523 |
Target: 5'- uGCUCaaGCGCGCCACGCugcccgacaACAuGCAaGaGGCc -3' miRNA: 3'- -UGAG--CGCGCGGUGCG---------UGU-CGUaC-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 3070 | 0.7 | 0.460437 |
Target: 5'- aGCg-GCGCGCCGgggucgcccacggcgUGCACGcGCcgGGGCg -3' miRNA: 3'- -UGagCGCGCGGU---------------GCGUGU-CGuaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 89152 | 0.7 | 0.447697 |
Target: 5'- aAC-CGCGCGCCGCGCgguuucguGCAcGC-UGGcGCa -3' miRNA: 3'- -UGaGCGCGCGGUGCG--------UGU-CGuACC-CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 41442 | 0.71 | 0.429842 |
Target: 5'- cGCUgCGCGCGCaCAgGCGCcGguUGcGGCg -3' miRNA: 3'- -UGA-GCGCGCG-GUgCGUGuCguAC-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 59928 | 0.72 | 0.378898 |
Target: 5'- cGCUCGC-CGaCGCGCAC-GCccaGUGGGCg -3' miRNA: 3'- -UGAGCGcGCgGUGCGUGuCG---UACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 31116 | 0.72 | 0.37081 |
Target: 5'- --aCGCGUGCCGCGCgccGCAGCAaUGuGCa -3' miRNA: 3'- ugaGCGCGCGGUGCG---UGUCGU-ACcCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 92173 | 0.72 | 0.354991 |
Target: 5'- aGCUCGC-CGCCGCGCGCcGCc--GGCc -3' miRNA: 3'- -UGAGCGcGCGGUGCGUGuCGuacCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 90670 | 0.72 | 0.347261 |
Target: 5'- cGCUgGCGCugggGCUGCGCACAGuCAacgaGGGCa -3' miRNA: 3'- -UGAgCGCG----CGGUGCGUGUC-GUa---CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 120417 | 0.73 | 0.317558 |
Target: 5'- gGCUggaaGUGCGCaguCGCACGGCG-GGGCa -3' miRNA: 3'- -UGAg---CGCGCGgu-GCGUGUCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 66890 | 0.74 | 0.279253 |
Target: 5'- aAUUCGCgGCGCCAucguguuuugcauaaUGCugGGCAcGGGCa -3' miRNA: 3'- -UGAGCG-CGCGGU---------------GCGugUCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 90044 | 0.75 | 0.251806 |
Target: 5'- gGCgCGCGUGCCgGCGgaaauCACaAGCAUGGGCg -3' miRNA: 3'- -UGaGCGCGCGG-UGC-----GUG-UCGUACCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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