miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 41442 0.71 0.429842
Target:  5'- cGCUgCGCGCGCaCAgGCGCcGguUGcGGCg -3'
miRNA:   3'- -UGA-GCGCGCG-GUgCGUGuCguAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 11182 0.7 0.456778
Target:  5'- ---aGCGCGCCGuCGUuuucagugaACAGgAUGGGCu -3'
miRNA:   3'- ugagCGCGCGGU-GCG---------UGUCgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 89995 0.75 0.223355
Target:  5'- aGCUCGC-CGCCGCgGCGCGGCAacUGGacGCg -3'
miRNA:   3'- -UGAGCGcGCGGUG-CGUGUCGU--ACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 96448 0.75 0.251806
Target:  5'- cGCUcgCGCGCGCCACGgACAGCAgc-GCc -3'
miRNA:   3'- -UGA--GCGCGCGGUGCgUGUCGUaccCG- -5'
6840 5' -59.8 NC_001875.2 + 111200 0.74 0.283175
Target:  5'- gGCggCGCGCGCCguuuuuuguuGCuCACgGGCGUGGGCa -3'
miRNA:   3'- -UGa-GCGCGCGG----------UGcGUG-UCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 79871 0.73 0.324801
Target:  5'- --gCGCGUGguCCACGCGCGcGCGUGcGGCa -3'
miRNA:   3'- ugaGCGCGC--GGUGCGUGU-CGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 110576 0.72 0.354991
Target:  5'- uGCUCGUagccGCGCCGCGCGCGcGCcUGGa- -3'
miRNA:   3'- -UGAGCG----CGCGGUGCGUGU-CGuACCcg -5'
6840 5' -59.8 NC_001875.2 + 13744 0.72 0.362841
Target:  5'- cACUCGCgcgGCGUCGCGCACAaaGUGGugGCa -3'
miRNA:   3'- -UGAGCG---CGCGGUGCGUGUcgUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 21752 0.72 0.374031
Target:  5'- gGC-CGCGCGuggcggccuCCACGCGCAGCGUcucugcgcgcgacacGGGUu -3'
miRNA:   3'- -UGaGCGCGC---------GGUGCGUGUCGUA---------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 61598 0.71 0.392917
Target:  5'- gGCUCGgGCGCCggcgGCGCuucgggcugugucgGCGGCGccucGGGCg -3'
miRNA:   3'- -UGAGCgCGCGG----UGCG--------------UGUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 18764 0.68 0.601427
Target:  5'- cGCUgaCGCGCGUCGCcaucaaaGC-CAGCucuguaGUGGGCa -3'
miRNA:   3'- -UGA--GCGCGCGGUG-------CGuGUCG------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 46486 0.68 0.592349
Target:  5'- --aCGCGaaCGCCGC-CACGGCGUcGGCg -3'
miRNA:   3'- ugaGCGC--GCGGUGcGUGUCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 39234 0.7 0.465956
Target:  5'- cGCUCGCGC-CCACcacucuGCACAGC---GGCa -3'
miRNA:   3'- -UGAGCGCGcGGUG------CGUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 52353 0.7 0.484594
Target:  5'- uGCggCGCGUGCCGCGC-CAGCGUccaaGaGCg -3'
miRNA:   3'- -UGa-GCGCGCGGUGCGuGUCGUAc---C-CG- -5'
6840 5' -59.8 NC_001875.2 + 91627 0.69 0.503581
Target:  5'- aAUUUGCuGCGCCGaauagcCGCGCAGCAgcuGGCc -3'
miRNA:   3'- -UGAGCG-CGCGGU------GCGUGUCGUac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 97515 0.69 0.522883
Target:  5'- uCUCGUGCGUUuCGUcuuCGGgGUGGGCg -3'
miRNA:   3'- uGAGCGCGCGGuGCGu--GUCgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 89785 0.69 0.532642
Target:  5'- cGCUCGUGCaCgUGCGCgaacGCAGCGcGGGCg -3'
miRNA:   3'- -UGAGCGCGcG-GUGCG----UGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 70234 0.69 0.542464
Target:  5'- uCUCGCcaaGCCAgCGCGCGGUgaucGGGCg -3'
miRNA:   3'- uGAGCGcg-CGGU-GCGUGUCGua--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 94657 0.68 0.562282
Target:  5'- cCUCGaacaugaaaUGgGCCAgCGCGCGGCAcGGGUg -3'
miRNA:   3'- uGAGC---------GCgCGGU-GCGUGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 62991 0.68 0.578275
Target:  5'- cACUCGCGCaCCGCgugcgacccguccGCcaggcagcgcaaauACAGCGUGGGa -3'
miRNA:   3'- -UGAGCGCGcGGUG-------------CG--------------UGUCGUACCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.