Results 81 - 100 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6840 | 5' | -59.8 | NC_001875.2 | + | 9953 | 0.7 | 0.47523 |
Target: 5'- --cUGCGCGUCgACG-ACAGCGUGGuGCa -3' miRNA: 3'- ugaGCGCGCGG-UGCgUGUCGUACC-CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 9136 | 0.69 | 0.503581 |
Target: 5'- gACUCGCGCGCCA-GUuCGGUGUccacGGCg -3' miRNA: 3'- -UGAGCGCGCGGUgCGuGUCGUAc---CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 120772 | 0.69 | 0.513195 |
Target: 5'- --gCGCGCGCCACGCcaaacugcuGCAGUuUGcGCg -3' miRNA: 3'- ugaGCGCGCGGUGCG---------UGUCGuACcCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 63133 | 0.69 | 0.532642 |
Target: 5'- gGCcgggCGCGCgGCCgGCGCACGGgucCAcGGGCa -3' miRNA: 3'- -UGa---GCGCG-CGG-UGCGUGUC---GUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 18430 | 0.69 | 0.542464 |
Target: 5'- uACUCG-GCGCgAgGCGCGguccGCGUGGcGCg -3' miRNA: 3'- -UGAGCgCGCGgUgCGUGU----CGUACC-CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 94657 | 0.68 | 0.562282 |
Target: 5'- cCUCGaacaugaaaUGgGCCAgCGCGCGGCAcGGGUg -3' miRNA: 3'- uGAGC---------GCgCGGU-GCGUGUCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 62991 | 0.68 | 0.578275 |
Target: 5'- cACUCGCGCaCCGCgugcgacccguccGCcaggcagcgcaaauACAGCGUGGGa -3' miRNA: 3'- -UGAGCGCGcGGUG-------------CG--------------UGUCGUACCCg -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 61598 | 0.71 | 0.392917 |
Target: 5'- gGCUCGgGCGCCggcgGCGCuucgggcugugucgGCGGCGccucGGGCg -3' miRNA: 3'- -UGAGCgCGCGG----UGCG--------------UGUCGUa---CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 21752 | 0.72 | 0.374031 |
Target: 5'- gGC-CGCGCGuggcggccuCCACGCGCAGCGUcucugcgcgcgacacGGGUu -3' miRNA: 3'- -UGaGCGCGC---------GGUGCGUGUCGUA---------------CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 13744 | 0.72 | 0.362841 |
Target: 5'- cACUCGCgcgGCGUCGCGCACAaaGUGGugGCa -3' miRNA: 3'- -UGAGCG---CGCGGUGCGUGUcgUACC--CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 77832 | 0.67 | 0.612547 |
Target: 5'- uACgCGCGCGCCgcaaggccguGCGCGacCAGC-UGcGGCa -3' miRNA: 3'- -UGaGCGCGCGG----------UGCGU--GUCGuAC-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 46615 | 0.67 | 0.622671 |
Target: 5'- cGCUCGUcgacaugcgGCGCUAcCGCGCGGCGgcccgucGGCu -3' miRNA: 3'- -UGAGCG---------CGCGGU-GCGUGUCGUac-----CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 82985 | 0.67 | 0.632802 |
Target: 5'- cCUCGCgGCGCCGCucgucGC-CGGC--GGGCu -3' miRNA: 3'- uGAGCG-CGCGGUG-----CGuGUCGuaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 89110 | 0.67 | 0.642933 |
Target: 5'- --gCGCGuCGCCGCGCGCGaCGaccGGGUg -3' miRNA: 3'- ugaGCGC-GCGGUGCGUGUcGUa--CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 32569 | 0.67 | 0.642933 |
Target: 5'- gGCUgcaGCaGUGCCGCGCGCAccucgacuaGCcGUGGGUu -3' miRNA: 3'- -UGAg--CG-CGCGGUGCGUGU---------CG-UACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 89995 | 0.75 | 0.223355 |
Target: 5'- aGCUCGC-CGCCGCgGCGCGGCAacUGGacGCg -3' miRNA: 3'- -UGAGCGcGCGGUG-CGUGUCGU--ACC--CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 96448 | 0.75 | 0.251806 |
Target: 5'- cGCUcgCGCGCGCCACGgACAGCAgc-GCc -3' miRNA: 3'- -UGA--GCGCGCGGUGCgUGUCGUaccCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 111200 | 0.74 | 0.283175 |
Target: 5'- gGCggCGCGCGCCguuuuuuguuGCuCACgGGCGUGGGCa -3' miRNA: 3'- -UGa-GCGCGCGG----------UGcGUG-UCGUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 79871 | 0.73 | 0.324801 |
Target: 5'- --gCGCGUGguCCACGCGCGcGCGUGcGGCa -3' miRNA: 3'- ugaGCGCGC--GGUGCGUGU-CGUAC-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 110576 | 0.72 | 0.354991 |
Target: 5'- uGCUCGUagccGCGCCGCGCGCGcGCcUGGa- -3' miRNA: 3'- -UGAGCG----CGCGGUGCGUGU-CGuACCcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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