miRNA display CGI


Results 121 - 140 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 89785 0.69 0.532642
Target:  5'- cGCUCGUGCaCgUGCGCgaacGCAGCGcGGGCg -3'
miRNA:   3'- -UGAGCGCGcG-GUGCG----UGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 18764 0.68 0.601427
Target:  5'- cGCUgaCGCGCGUCGCcaucaaaGC-CAGCucuguaGUGGGCa -3'
miRNA:   3'- -UGA--GCGCGCGGUG-------CGuGUCG------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 70234 0.69 0.542464
Target:  5'- uCUCGCcaaGCCAgCGCGCGGUgaucGGGCg -3'
miRNA:   3'- uGAGCGcg-CGGU-GCGUGUCGua--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 94657 0.68 0.562282
Target:  5'- cCUCGaacaugaaaUGgGCCAgCGCGCGGCAcGGGUg -3'
miRNA:   3'- uGAGC---------GCgCGGU-GCGUGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 46486 0.68 0.592349
Target:  5'- --aCGCGaaCGCCGC-CACGGCGUcGGCg -3'
miRNA:   3'- ugaGCGC--GCGGUGcGUGUCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 62991 0.68 0.578275
Target:  5'- cACUCGCGCaCCGCgugcgacccguccGCcaggcagcgcaaauACAGCGUGGGa -3'
miRNA:   3'- -UGAGCGCGcGGUG-------------CG--------------UGUCGUACCCg -5'
6840 5' -59.8 NC_001875.2 + 97879 0.68 0.592349
Target:  5'- gGCU-GCGCGCCGCacggGCACguugcgGGCGUcGGCg -3'
miRNA:   3'- -UGAgCGCGCGGUG----CGUG------UCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 6952 0.66 0.72592
Target:  5'- --gCGUGCGCCGCGacaucgcCACGGCGcgcugcuugacagcGGGCa -3'
miRNA:   3'- ugaGCGCGCGGUGC-------GUGUCGUa-------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 39640 0.68 0.58229
Target:  5'- gGCgCGCaGCGaaCCGCGCGCgAGUuUGGGCc -3'
miRNA:   3'- -UGaGCG-CGC--GGUGCGUG-UCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 50366 0.68 0.599409
Target:  5'- gGCcgCGCGCGCCAcugacCGCGgacCAGCGUGuacuuuuugcggacGGCg -3'
miRNA:   3'- -UGa-GCGCGCGGU-----GCGU---GUCGUAC--------------CCG- -5'
6840 5' -59.8 NC_001875.2 + 32796 0.68 0.58229
Target:  5'- --nCGgGCGCCGCGC-CGGCAagcucGGCg -3'
miRNA:   3'- ugaGCgCGCGGUGCGuGUCGUac---CCG- -5'
6840 5' -59.8 NC_001875.2 + 84906 0.66 0.722986
Target:  5'- cCUUG-GCGUa--GCGCAGCAcgGGGCu -3'
miRNA:   3'- uGAGCgCGCGgugCGUGUCGUa-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 24193 0.68 0.581285
Target:  5'- uACUUGUuugcccaacugugGCGCUgaGCGCGCAGUAUGcguuGGCa -3'
miRNA:   3'- -UGAGCG-------------CGCGG--UGCGUGUCGUAC----CCG- -5'
6840 5' -59.8 NC_001875.2 + 48739 0.71 0.390419
Target:  5'- --gCGCGgGCCA-GCACAGUagcacguacgacgugGUGGGCa -3'
miRNA:   3'- ugaGCGCgCGGUgCGUGUCG---------------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 41810 0.66 0.722986
Target:  5'- gGCaCGCGCGCCgGCGCcGCGGCcaguUGcGCg -3'
miRNA:   3'- -UGaGCGCGCGG-UGCG-UGUCGu---ACcCG- -5'
6840 5' -59.8 NC_001875.2 + 29798 0.66 0.722986
Target:  5'- gACUgUGCGgGCgCugGCGgcGCAUGGGUc -3'
miRNA:   3'- -UGA-GCGCgCG-GugCGUguCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 2849 0.66 0.722986
Target:  5'- ---aGCGUGUUGCGCcaagaauuuguaGCAGCGguugGGGCg -3'
miRNA:   3'- ugagCGCGCGGUGCG------------UGUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 72957 0.66 0.720044
Target:  5'- uUUCGgGCGCCACGgCGCGccugauuagguugcGCAaaaacccGGGCa -3'
miRNA:   3'- uGAGCgCGCGGUGC-GUGU--------------CGUa------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 4435 0.66 0.713155
Target:  5'- uGCUgaCGCGCGCCGCcaGCACuuuGGCca-GGCu -3'
miRNA:   3'- -UGA--GCGCGCGGUG--CGUG---UCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 122199 0.7 0.47523
Target:  5'- aGCUCGCGaaaCACGCACGGCGcGcGCa -3'
miRNA:   3'- -UGAGCGCgcgGUGCGUGUCGUaCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.