miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 62037 0.66 0.704249
Target:  5'- -aUCGCGCuGCUGCGCAagcucuacaaaacuaAGCAUGGauuuGCa -3'
miRNA:   3'- ugAGCGCG-CGGUGCGUg--------------UCGUACC----CG- -5'
6840 5' -59.8 NC_001875.2 + 36703 0.66 0.703256
Target:  5'- --aCGCcaaCGUCAacaGCaACGGCGUGGGCu -3'
miRNA:   3'- ugaGCGc--GCGGUg--CG-UGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 6438 0.66 0.703256
Target:  5'- cAUUUGCGCGCCGuCGUAgUAGCGcGcGGUg -3'
miRNA:   3'- -UGAGCGCGCGGU-GCGU-GUCGUaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 48374 0.66 0.703256
Target:  5'- -aUCGCGCGCCcgucCGaCGCGGCGacaGGuGCc -3'
miRNA:   3'- ugAGCGCGCGGu---GC-GUGUCGUa--CC-CG- -5'
6840 5' -59.8 NC_001875.2 + 125340 0.66 0.703256
Target:  5'- gGCggccaGCGUG-UugGCGCGGCAcuccgcguUGGGCg -3'
miRNA:   3'- -UGag---CGCGCgGugCGUGUCGU--------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 11963 0.66 0.703256
Target:  5'- gGCggCGCGUugcaaaGCaCugGCgACGGCGUuGGGCg -3'
miRNA:   3'- -UGa-GCGCG------CG-GugCG-UGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 33858 0.66 0.703256
Target:  5'- -gUCGCGCaCCGUGCGCGGCc--GGCa -3'
miRNA:   3'- ugAGCGCGcGGUGCGUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 91623 0.66 0.702263
Target:  5'- --aCGCGCGUUuCGC-CGGCGccaauuuccgugaUGGGCa -3'
miRNA:   3'- ugaGCGCGCGGuGCGuGUCGU-------------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 66054 0.66 0.700275
Target:  5'- cAC-CGCGCGCCgACGCcGCGcGCGUGcucgcccagccgccGGCu -3'
miRNA:   3'- -UGaGCGCGCGG-UGCG-UGU-CGUAC--------------CCG- -5'
6840 5' -59.8 NC_001875.2 + 38661 0.66 0.697289
Target:  5'- uAC-CGCGUGCUGCucauguccaucaaguGCgGCGGCGUGGGg -3'
miRNA:   3'- -UGaGCGCGCGGUG---------------CG-UGUCGUACCCg -5'
6840 5' -59.8 NC_001875.2 + 83798 0.66 0.693299
Target:  5'- --gCGCGCGCCcuCGUGCcu-GUGGGCg -3'
miRNA:   3'- ugaGCGCGCGGu-GCGUGucgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 77743 0.66 0.693299
Target:  5'- --aCGUGCGCUggcaGCGCAUcgacccCGUGGGCg -3'
miRNA:   3'- ugaGCGCGCGG----UGCGUGuc----GUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 115906 0.66 0.693299
Target:  5'- uGCUgGCGC-CC-CGC-CAGC-UGGGUc -3'
miRNA:   3'- -UGAgCGCGcGGuGCGuGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 115295 0.66 0.693299
Target:  5'- ---aGCGCGCCGCGCACGucauuguauuGCAcGcGCg -3'
miRNA:   3'- ugagCGCGCGGUGCGUGU----------CGUaCcCG- -5'
6840 5' -59.8 NC_001875.2 + 17101 0.66 0.693299
Target:  5'- aGC-CGCGCGCCAcuggcggcCGCAUaagcaAGCAUuuGGCg -3'
miRNA:   3'- -UGaGCGCGCGGU--------GCGUG-----UCGUAc-CCG- -5'
6840 5' -59.8 NC_001875.2 + 90499 0.66 0.693299
Target:  5'- aACUgCGCGCGgcCCACuuGCACGGCGUacGCg -3'
miRNA:   3'- -UGA-GCGCGC--GGUG--CGUGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 72555 0.66 0.693299
Target:  5'- --aCGgGCGCUGCGgGCgcgGGCGcGGGCg -3'
miRNA:   3'- ugaGCgCGCGGUGCgUG---UCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 74651 0.66 0.693299
Target:  5'- ---aGCGUGCCAUGgcCGgGGC-UGGGCg -3'
miRNA:   3'- ugagCGCGCGGUGC--GUgUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 18161 0.66 0.693299
Target:  5'- uGCggCGCGCGCgACGCcgccacugugGCGGUGccggcGGGCg -3'
miRNA:   3'- -UGa-GCGCGCGgUGCG----------UGUCGUa----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 104208 0.66 0.690302
Target:  5'- --aUGCGCGaaccacggccuaaaCCACGCGguGCuguugGUGGGCu -3'
miRNA:   3'- ugaGCGCGC--------------GGUGCGUguCG-----UACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.