Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6842 | 3' | -58.3 | NC_001875.2 | + | 127906 | 0.66 | 0.703013 |
Target: 5'- aCGCu-GCAGCUGCAguuucucgcaaagcuCAGC-GCGCAGc -3' miRNA: 3'- -GCGucCGUCGACGU---------------GUCGuCGCGUUu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 84134 | 0.66 | 0.703013 |
Target: 5'- aGCAGGCAGUcgUGCACuugccccgcguugagAaacgcGCGGCGCGc- -3' miRNA: 3'- gCGUCCGUCG--ACGUG---------------U-----CGUCGCGUuu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 131289 | 0.66 | 0.698886 |
Target: 5'- uGCaAGcGCAGCUGgAC-GCcGCGCAAAa -3' miRNA: 3'- gCG-UC-CGUCGACgUGuCGuCGCGUUU- -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 83927 | 0.66 | 0.698886 |
Target: 5'- aCGUAcGCGuGCUGCgGCAGCAccaccGCGCGAAa -3' miRNA: 3'- -GCGUcCGU-CGACG-UGUCGU-----CGCGUUU- -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 66657 | 0.66 | 0.697853 |
Target: 5'- uGUuGGcCAGCUGCuggucgaACGGCAGCGgGAu -3' miRNA: 3'- gCGuCC-GUCGACG-------UGUCGUCGCgUUu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 18661 | 0.66 | 0.695785 |
Target: 5'- uCGCAGcgcgucacgguGCGGCUGCugGGCgaaacguacaaggcGGCGCu-- -3' miRNA: 3'- -GCGUC-----------CGUCGACGugUCG--------------UCGCGuuu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 39127 | 0.66 | 0.695785 |
Target: 5'- gGCGGGCAGCgcGCucaaguauaaaaacGCGGCagAGUGCAGc -3' miRNA: 3'- gCGUCCGUCGa-CG--------------UGUCG--UCGCGUUu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 126865 | 0.66 | 0.692679 |
Target: 5'- aGCgAGGCGGCuuUGCAguUaaugguggagaccgaGGCGGCGCAAAg -3' miRNA: 3'- gCG-UCCGUCG--ACGU--G---------------UCGUCGCGUUU- -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 19007 | 0.66 | 0.689568 |
Target: 5'- gCGCAGGCcGCaacgcgcuuugcacgUGCGCGGCGuuuuuaagugcgguGUGCAAAa -3' miRNA: 3'- -GCGUCCGuCG---------------ACGUGUCGU--------------CGCGUUU- -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 99391 | 0.66 | 0.688531 |
Target: 5'- cCGCAccGGCGGCgccagcgGguCGcGCAGCGCAu- -3' miRNA: 3'- -GCGU--CCGUCGa------CguGU-CGUCGCGUuu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 86179 | 0.66 | 0.688531 |
Target: 5'- gCGCAGGUuuugcaaguaauGGCUGgGCAuGCucucgauguauuGGCGCAGAa -3' miRNA: 3'- -GCGUCCG------------UCGACgUGU-CG------------UCGCGUUU- -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 11906 | 0.66 | 0.688531 |
Target: 5'- gCGCGaacGGCGGCgagcagguguuuUGCGC-GCGGCGCGc- -3' miRNA: 3'- -GCGU---CCGUCG------------ACGUGuCGUCGCGUuu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 124484 | 0.66 | 0.688531 |
Target: 5'- gGCGGGCA-CUGCACcGCAG-GCu-- -3' miRNA: 3'- gCGUCCGUcGACGUGuCGUCgCGuuu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 111927 | 0.66 | 0.687492 |
Target: 5'- gGcCGGuGCAGCUGCcguacgaGCAGCuaaaAGCGCAc- -3' miRNA: 3'- gC-GUC-CGUCGACG-------UGUCG----UCGCGUuu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 78985 | 0.66 | 0.682293 |
Target: 5'- gCGCAGGUagaagcgcgucaaccAGCUGgACAGCGuguccgagucGCGCGc- -3' miRNA: 3'- -GCGUCCG---------------UCGACgUGUCGU----------CGCGUuu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 66991 | 0.66 | 0.682293 |
Target: 5'- --aGGGCaAGCUGCGCAGCgacacaaucgggcucAaGCGCAAGc -3' miRNA: 3'- gcgUCCG-UCGACGUGUCG---------------U-CGCGUUU- -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 118188 | 0.66 | 0.678125 |
Target: 5'- aGUGGGCuguuuguGUUGaGCGGCGGCGCGGc -3' miRNA: 3'- gCGUCCGu------CGACgUGUCGUCGCGUUu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 102354 | 0.66 | 0.677083 |
Target: 5'- uCGUuuGCAGCUGCAguucgucCAGCAuggcGCGCAAc -3' miRNA: 3'- -GCGucCGUCGACGU-------GUCGU----CGCGUUu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 23227 | 0.66 | 0.674996 |
Target: 5'- aGCAGuaaacgugguuaGCAGCUGguCggagaacagcgacgGGCAGCGCAGc -3' miRNA: 3'- gCGUC------------CGUCGACguG--------------UCGUCGCGUUu -5' |
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6842 | 3' | -58.3 | NC_001875.2 | + | 92640 | 0.67 | 0.66768 |
Target: 5'- aCGU-GGCGGUUGU--AGCGGCGCAc- -3' miRNA: 3'- -GCGuCCGUCGACGugUCGUCGCGUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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