miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 5' -56 NC_001875.2 + 29647 0.66 0.889322
Target:  5'- cGGaUUUGgGCUAcCAGaCCACgcuguacGCGCCCa -3'
miRNA:   3'- -CC-AAACgCGGUuGUC-GGUG-------UGCGGGc -5'
6842 5' -56 NC_001875.2 + 88895 0.66 0.883079
Target:  5'- ---cUGCGCgGGCuGCUgacGCACGCCaCGu -3'
miRNA:   3'- ccaaACGCGgUUGuCGG---UGUGCGG-GC- -5'
6842 5' -56 NC_001875.2 + 99397 0.66 0.883079
Target:  5'- cGGcg-GCGCCAGCgGGUCGCGCaGCgCa -3'
miRNA:   3'- -CCaaaCGCGGUUG-UCGGUGUG-CGgGc -5'
6842 5' -56 NC_001875.2 + 10360 0.66 0.883079
Target:  5'- --aUUGCGCCG--GGCUACG-GCCUGg -3'
miRNA:   3'- ccaAACGCGGUugUCGGUGUgCGGGC- -5'
6842 5' -56 NC_001875.2 + 11941 0.66 0.883079
Target:  5'- ----cGCGCCGACuGUgCGCGCGaCCGg -3'
miRNA:   3'- ccaaaCGCGGUUGuCG-GUGUGCgGGC- -5'
6842 5' -56 NC_001875.2 + 108246 0.66 0.883079
Target:  5'- ----cGCGUCAACgGGCUGCugGCCa- -3'
miRNA:   3'- ccaaaCGCGGUUG-UCGGUGugCGGgc -5'
6842 5' -56 NC_001875.2 + 81810 0.66 0.883079
Target:  5'- ----cGgGCCGGCcGCCuCGcCGCCCGg -3'
miRNA:   3'- ccaaaCgCGGUUGuCGGuGU-GCGGGC- -5'
6842 5' -56 NC_001875.2 + 42349 0.66 0.883079
Target:  5'- ----aGCGCagucGCAGCgGCAUGCUCGc -3'
miRNA:   3'- ccaaaCGCGgu--UGUCGgUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 49642 0.66 0.883079
Target:  5'- ----gGCGaCAcgaGCGGCCGCcgGCGCCCa -3'
miRNA:   3'- ccaaaCGCgGU---UGUCGGUG--UGCGGGc -5'
6842 5' -56 NC_001875.2 + 128467 0.66 0.883079
Target:  5'- ----cGCGCCuccauauCAGCCGCGCGUUa- -3'
miRNA:   3'- ccaaaCGCGGuu-----GUCGGUGUGCGGgc -5'
6842 5' -56 NC_001875.2 + 116900 0.66 0.883079
Target:  5'- aGGUgcacGaCGCCAAC-GCCAUcCGCaCCGa -3'
miRNA:   3'- -CCAaa--C-GCGGUUGuCGGUGuGCG-GGC- -5'
6842 5' -56 NC_001875.2 + 84176 0.66 0.883079
Target:  5'- ----cGCGCC-GCGGCC--GCGUCCGu -3'
miRNA:   3'- ccaaaCGCGGuUGUCGGugUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 121348 0.66 0.875928
Target:  5'- ----cGCGCCAGCAGCUcgaacucguucaGCaaGCGCCa- -3'
miRNA:   3'- ccaaaCGCGGUUGUCGG------------UG--UGCGGgc -5'
6842 5' -56 NC_001875.2 + 48520 0.66 0.875928
Target:  5'- ----cGCGCCGcCcGgCGCGCGCCCc -3'
miRNA:   3'- ccaaaCGCGGUuGuCgGUGUGCGGGc -5'
6842 5' -56 NC_001875.2 + 28015 0.66 0.875928
Target:  5'- gGGUggcgaagGC-CCAGCAcgcGCCGCaaACGCCCu -3'
miRNA:   3'- -CCAaa-----CGcGGUUGU---CGGUG--UGCGGGc -5'
6842 5' -56 NC_001875.2 + 33496 0.66 0.875928
Target:  5'- uGGggUGCGCCAACcGauuguaCACGCaGCgCGg -3'
miRNA:   3'- -CCaaACGCGGUUGuCg-----GUGUG-CGgGC- -5'
6842 5' -56 NC_001875.2 + 39662 0.66 0.868555
Target:  5'- aGUUUGgGCCGGCGGC-GCGCGgCgGc -3'
miRNA:   3'- cCAAACgCGGUUGUCGgUGUGCgGgC- -5'
6842 5' -56 NC_001875.2 + 42751 0.66 0.868555
Target:  5'- ----cGCGCaugGugAGCgGCGCGCUCGg -3'
miRNA:   3'- ccaaaCGCGg--UugUCGgUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 120830 0.66 0.868555
Target:  5'- uGGgcagGCacaCCAugGGCaCGCGCGCCUGc -3'
miRNA:   3'- -CCaaa-CGc--GGUugUCG-GUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 91745 0.66 0.868555
Target:  5'- ----aGCGCCAGcCAGUgGCGCGUCa- -3'
miRNA:   3'- ccaaaCGCGGUU-GUCGgUGUGCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.