Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6844 | 3' | -55 | NC_001875.2 | + | 97536 | 0.66 | 0.88182 |
Target: 5'- -gGUggGCGCGUuuggUGGCCAUGGcUGUc -3' miRNA: 3'- uaCGuuCGUGCGca--ACCGGUGUC-ACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 63133 | 0.66 | 0.88182 |
Target: 5'- -gGcCGGGCGCGCGgccGGCgCACGGguccacggGCa -3' miRNA: 3'- uaC-GUUCGUGCGCaa-CCG-GUGUCa-------CG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 90013 | 0.66 | 0.88182 |
Target: 5'- -gGCAAcuGgACGCGcaacUGGCCGCGGcGCc -3' miRNA: 3'- uaCGUU--CgUGCGCa---ACCGGUGUCaCG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 60659 | 0.66 | 0.88182 |
Target: 5'- aAUGCGcguaccaaAGUGCGCGcUGGCgGCAGUu- -3' miRNA: 3'- -UACGU--------UCGUGCGCaACCGgUGUCAcg -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 38455 | 0.66 | 0.88182 |
Target: 5'- aGUGCcGGCGCGCGcuagaaUUGGUgcaGCGcGUGCu -3' miRNA: 3'- -UACGuUCGUGCGC------AACCGg--UGU-CACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 21505 | 0.66 | 0.88182 |
Target: 5'- uGUGCuacacGCACGCccaUUGGCUGUGGUGCg -3' miRNA: 3'- -UACGuu---CGUGCGc--AACCGGUGUCACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 104704 | 0.66 | 0.881092 |
Target: 5'- -cGCuaAGGCugGUGgugUGGCCGCcaaacuuGGUGUu -3' miRNA: 3'- uaCG--UUCGugCGCa--ACCGGUG-------UCACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 18048 | 0.66 | 0.874433 |
Target: 5'- aAUGCGAcauGCGCGUGgcggacaaccGGCCAagccaGGUGCu -3' miRNA: 3'- -UACGUU---CGUGCGCaa--------CCGGUg----UCACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 43020 | 0.66 | 0.874433 |
Target: 5'- uUGCGAGUGcCGCGc--GCCGCGGcGCg -3' miRNA: 3'- uACGUUCGU-GCGCaacCGGUGUCaCG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 72562 | 0.66 | 0.874433 |
Target: 5'- cUGCGGGCGCGgGcgcGGgCGCugcgGGUGCg -3' miRNA: 3'- uACGUUCGUGCgCaa-CCgGUG----UCACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 13546 | 0.66 | 0.874433 |
Target: 5'- uUGCAAGCGCGCcagcugcaGCCACucuUGCg -3' miRNA: 3'- uACGUUCGUGCGcaac----CGGUGuc-ACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 65751 | 0.66 | 0.872171 |
Target: 5'- -cGCGGGCcucggcguauucguGCGCGgcgGGCgGCGGcGCg -3' miRNA: 3'- uaCGUUCG--------------UGCGCaa-CCGgUGUCaCG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 130684 | 0.66 | 0.870651 |
Target: 5'- cAUGCAcGGCACGCGgccccacuuuuGCCACGGccuuauuUGCa -3' miRNA: 3'- -UACGU-UCGUGCGCaac--------CGGUGUC-------ACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 21915 | 0.66 | 0.866813 |
Target: 5'- -gGUGAGCgGCGCGUgcaUGGCUaaGCGGgGCg -3' miRNA: 3'- uaCGUUCG-UGCGCA---ACCGG--UGUCaCG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 58793 | 0.66 | 0.866813 |
Target: 5'- -cGCAaaacAGCGCcgaGUUGGCC-CAGcUGCa -3' miRNA: 3'- uaCGU----UCGUGcg-CAACCGGuGUC-ACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 128902 | 0.66 | 0.866813 |
Target: 5'- -aGCAAGCGCGCca--GCgCGCGGUGa -3' miRNA: 3'- uaCGUUCGUGCGcaacCG-GUGUCACg -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 33918 | 0.66 | 0.866813 |
Target: 5'- gGUGCAGcGaCACGUGaggUGGCC-CAGcuUGCg -3' miRNA: 3'- -UACGUU-C-GUGCGCa--ACCGGuGUC--ACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 50009 | 0.66 | 0.866813 |
Target: 5'- -cGCGguuggGGCGCGCG-UGGUCGcCGGgcgGCg -3' miRNA: 3'- uaCGU-----UCGUGCGCaACCGGU-GUCa--CG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 127882 | 0.66 | 0.866038 |
Target: 5'- -gGCAAGCGCGgcguCGUUGuugacacGCUGCAGcUGCa -3' miRNA: 3'- uaCGUUCGUGC----GCAAC-------CGGUGUC-ACG- -5' |
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6844 | 3' | -55 | NC_001875.2 | + | 77963 | 0.66 | 0.865261 |
Target: 5'- -cGCGgcGGCGCGCacgaccaacaGGCCgACGGUGCc -3' miRNA: 3'- uaCGU--UCGUGCGcaa-------CCGG-UGUCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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