miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6844 5' -60.1 NC_001875.2 + 97893 0.66 0.741704
Target:  5'- cGGGCACguUGCggGcGUCGGCGcCGa -3'
miRNA:   3'- -CCCGUGguACGggCuCAGCCGCuGCa -5'
6844 5' -60.1 NC_001875.2 + 77630 0.66 0.738855
Target:  5'- cGGCGgCAacgGCUCGGGUCuggugccgaacccgGGCGACGc -3'
miRNA:   3'- cCCGUgGUa--CGGGCUCAG--------------CCGCUGCa -5'
6844 5' -60.1 NC_001875.2 + 88127 0.66 0.732176
Target:  5'- cGGGCACgGUG-CUGAG-CGGCGcCa- -3'
miRNA:   3'- -CCCGUGgUACgGGCUCaGCCGCuGca -5'
6844 5' -60.1 NC_001875.2 + 93194 0.66 0.732176
Target:  5'- -aGCACgCG-GUacggCGAGUCGGCGGCGUu -3'
miRNA:   3'- ccCGUG-GUaCGg---GCUCAGCCGCUGCA- -5'
6844 5' -60.1 NC_001875.2 + 27886 0.66 0.732176
Target:  5'- cGGUcguucGCCGUGCUgGccaUCGGCGACGa -3'
miRNA:   3'- cCCG-----UGGUACGGgCuc-AGCCGCUGCa -5'
6844 5' -60.1 NC_001875.2 + 19346 0.66 0.732176
Target:  5'- uGGGCGugGUGCgCGGagcGUUGGcCGACGUa -3'
miRNA:   3'- -CCCGUggUACGgGCU---CAGCC-GCUGCA- -5'
6844 5' -60.1 NC_001875.2 + 40646 0.66 0.722564
Target:  5'- uGGGCGCgCAcGCgCCGGcuGUUGcGCGGCGa -3'
miRNA:   3'- -CCCGUG-GUaCG-GGCU--CAGC-CGCUGCa -5'
6844 5' -60.1 NC_001875.2 + 77168 0.66 0.722564
Target:  5'- cGGCaACUuuuacugGCCCGAcaaCGGCGACGg -3'
miRNA:   3'- cCCG-UGGua-----CGGGCUca-GCCGCUGCa -5'
6844 5' -60.1 NC_001875.2 + 95355 0.66 0.712879
Target:  5'- cGGCGCaCGUGCaCGcGUCGGCGgaaaACGg -3'
miRNA:   3'- cCCGUG-GUACGgGCuCAGCCGC----UGCa -5'
6844 5' -60.1 NC_001875.2 + 78287 0.66 0.712879
Target:  5'- cGGCACCAaGCCCGuuugCGGCucGCGc -3'
miRNA:   3'- cCCGUGGUaCGGGCuca-GCCGc-UGCa -5'
6844 5' -60.1 NC_001875.2 + 111753 0.66 0.712879
Target:  5'- gGGGCGCCcaucacGUGCgCCGAcgacugguGUCgcuGGUGACGg -3'
miRNA:   3'- -CCCGUGG------UACG-GGCU--------CAG---CCGCUGCa -5'
6844 5' -60.1 NC_001875.2 + 77684 0.66 0.712879
Target:  5'- cGGGCAgcuuuacuCUAUcCCCGuGUCGGUGcCGUa -3'
miRNA:   3'- -CCCGU--------GGUAcGGGCuCAGCCGCuGCA- -5'
6844 5' -60.1 NC_001875.2 + 17824 0.66 0.707036
Target:  5'- gGGGCACCAUGUgccucaugauggugCCGGccgccgauuacauugCGGUGACGg -3'
miRNA:   3'- -CCCGUGGUACG--------------GGCUca-------------GCCGCUGCa -5'
6844 5' -60.1 NC_001875.2 + 48984 0.66 0.703128
Target:  5'- cGGGCGCCGaacUGCCCaAGUCGcccaagGugGUg -3'
miRNA:   3'- -CCCGUGGU---ACGGGcUCAGCcg----CugCA- -5'
6844 5' -60.1 NC_001875.2 + 119531 0.66 0.703128
Target:  5'- cGGGCGCguUGaCCaCGcacaCGGCGGCGUg -3'
miRNA:   3'- -CCCGUGguAC-GG-GCuca-GCCGCUGCA- -5'
6844 5' -60.1 NC_001875.2 + 60158 0.66 0.703128
Target:  5'- -uGCACCAcGCCgcauUGuGUCGGCGGCa- -3'
miRNA:   3'- ccCGUGGUaCGG----GCuCAGCCGCUGca -5'
6844 5' -60.1 NC_001875.2 + 14466 0.66 0.703128
Target:  5'- uGGGCACCcUGUaaaCCGAugUGGgGACGUc -3'
miRNA:   3'- -CCCGUGGuACG---GGCUcaGCCgCUGCA- -5'
6844 5' -60.1 NC_001875.2 + 117762 0.66 0.703128
Target:  5'- uGGGCugCAcgguaaaCCCGucgccGUUGGCGACGc -3'
miRNA:   3'- -CCCGugGUac-----GGGCu----CAGCCGCUGCa -5'
6844 5' -60.1 NC_001875.2 + 95415 0.66 0.693321
Target:  5'- -aGCACCA-GCCCGAcaccgCGGCGcCGg -3'
miRNA:   3'- ccCGUGGUaCGGGCUca---GCCGCuGCa -5'
6844 5' -60.1 NC_001875.2 + 98758 0.66 0.693321
Target:  5'- cGGCAa-GUGCCCGAcGUgcCGGCaaGACGUg -3'
miRNA:   3'- cCCGUggUACGGGCU-CA--GCCG--CUGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.