miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 3' -57.4 NC_001875.2 + 30095 0.67 0.721838
Target:  5'- cUUUguUGCUGUgCGCGCUguaCGCCGUGa -3'
miRNA:   3'- aAAAguACGGCGaGCGCGG---GUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 61876 0.67 0.71176
Target:  5'- ---aCGUGuuGgUCGCGUuuUCGCCGUGg -3'
miRNA:   3'- aaaaGUACggCgAGCGCG--GGUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 119375 0.67 0.71176
Target:  5'- cUUUCAgcaccgucugcUGCCGCUgaaugGCGUCCACCGc- -3'
miRNA:   3'- aAAAGU-----------ACGGCGAg----CGCGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 51962 0.67 0.71176
Target:  5'- ---aCGUGCCGCaCGCGCgCG-CGUGg -3'
miRNA:   3'- aaaaGUACGGCGaGCGCGgGUgGCAC- -5'
6847 3' -57.4 NC_001875.2 + 36126 0.68 0.701612
Target:  5'- --cUCAUGCacuuCGCguuucagCGCGCCCgaGCCGUa -3'
miRNA:   3'- aaaAGUACG----GCGa------GCGCGGG--UGGCAc -5'
6847 3' -57.4 NC_001875.2 + 67456 0.68 0.691404
Target:  5'- -cUUguUGCUGggCGCGCUgGCCGUGu -3'
miRNA:   3'- aaAAguACGGCgaGCGCGGgUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 2906 0.68 0.691404
Target:  5'- ------aGCCGCUCGUGCCuauuCACCGc- -3'
miRNA:   3'- aaaaguaCGGCGAGCGCGG----GUGGCac -5'
6847 3' -57.4 NC_001875.2 + 114285 0.68 0.691404
Target:  5'- ------aGCCGCUCGCGCCaACgGUu -3'
miRNA:   3'- aaaaguaCGGCGAGCGCGGgUGgCAc -5'
6847 3' -57.4 NC_001875.2 + 50937 0.68 0.691404
Target:  5'- uUUUUCAggcGCCGCUCGCGCgacuugcucugCCACUc-- -3'
miRNA:   3'- -AAAAGUa--CGGCGAGCGCG-----------GGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 129030 0.68 0.691404
Target:  5'- ---aCGUcGCCGCgcUCGCGCUCGCCa-- -3'
miRNA:   3'- aaaaGUA-CGGCG--AGCGCGGGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 7486 0.68 0.659477
Target:  5'- --cUCAUGCCGCUCauuuggcugaucgGCGCCgUGCUGUu -3'
miRNA:   3'- aaaAGUACGGCGAG-------------CGCGG-GUGGCAc -5'
6847 3' -57.4 NC_001875.2 + 96358 0.69 0.629408
Target:  5'- --gUCAUGCCGCUCaCGgCCAauGUGu -3'
miRNA:   3'- aaaAGUACGGCGAGcGCgGGUggCAC- -5'
6847 3' -57.4 NC_001875.2 + 9716 0.69 0.629408
Target:  5'- ---gCcgGCCGCgcCGCGCCCGaagCGUGg -3'
miRNA:   3'- aaaaGuaCGGCGa-GCGCGGGUg--GCAC- -5'
6847 3' -57.4 NC_001875.2 + 92177 0.69 0.629408
Target:  5'- ------cGCCGC-CGCGCgCCGCCGg- -3'
miRNA:   3'- aaaaguaCGGCGaGCGCG-GGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 52718 0.69 0.608668
Target:  5'- ------cGCCGCg-GCGCCCGCCGc- -3'
miRNA:   3'- aaaaguaCGGCGagCGCGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 65731 0.69 0.598321
Target:  5'- ------cGCCGcCUCGcCGCCCGCCGc- -3'
miRNA:   3'- aaaaguaCGGC-GAGC-GCGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 81353 0.7 0.588
Target:  5'- --cUgGUGCCGCgcgcaCGCGCCgGCCGc- -3'
miRNA:   3'- aaaAgUACGGCGa----GCGCGGgUGGCac -5'
6847 3' -57.4 NC_001875.2 + 25935 0.7 0.588
Target:  5'- uUUUUCGUGguggCGC-CGCGCCCGCCa-- -3'
miRNA:   3'- -AAAAGUACg---GCGaGCGCGGGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 102411 0.7 0.547114
Target:  5'- ---aCGUGUCgGCgUCGCGCUCGCCGUu -3'
miRNA:   3'- aaaaGUACGG-CG-AGCGCGGGUGGCAc -5'
6847 3' -57.4 NC_001875.2 + 93962 0.7 0.537025
Target:  5'- ---gCAaGCCGCUggCGCgGCCCGCCGUu -3'
miRNA:   3'- aaaaGUaCGGCGA--GCG-CGGGUGGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.