miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 5' -55.2 NC_001875.2 + 42333 0.66 0.875728
Target:  5'- aGCGGCcccaGGCGGaaGCGCAGucGCAGCGgCAu -3'
miRNA:   3'- cUGUCG----CCGUC--UGUGUU--UGUCGCgGU- -5'
6847 5' -55.2 NC_001875.2 + 88516 0.66 0.875728
Target:  5'- cGCGGCGGCAaccacgccGACcCGcGCGcGCGCCGc -3'
miRNA:   3'- cUGUCGCCGU--------CUGuGUuUGU-CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 72336 0.66 0.875728
Target:  5'- uGCGGCGGCacaugGGGCACucGAC-GCGCUu -3'
miRNA:   3'- cUGUCGCCG-----UCUGUGu-UUGuCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 82460 0.66 0.875728
Target:  5'- cGCGGCGGCAGGaACGGuACcGcCGCCGc -3'
miRNA:   3'- cUGUCGCCGUCUgUGUU-UGuC-GCGGU- -5'
6847 5' -55.2 NC_001875.2 + 74266 0.66 0.874984
Target:  5'- gGACAGCgcgacgccgcgccGGUuuacGCGCGAACAGCGCa- -3'
miRNA:   3'- -CUGUCG-------------CCGuc--UGUGUUUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 67899 0.66 0.87349
Target:  5'- cGACAGCgccuuccucGGCAGGaacggguucggguuCAUGAugcgGCGGCGCCAc -3'
miRNA:   3'- -CUGUCG---------CCGUCU--------------GUGUU----UGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 113536 0.66 0.868187
Target:  5'- aGCGGCGGCGGGgccaAUAAGC-GCGCgAa -3'
miRNA:   3'- cUGUCGCCGUCUg---UGUUUGuCGCGgU- -5'
6847 5' -55.2 NC_001875.2 + 102502 0.66 0.868187
Target:  5'- gGACcacaAGCGGUGGGCGCc-GCAGUGuCCGu -3'
miRNA:   3'- -CUG----UCGCCGUCUGUGuuUGUCGC-GGU- -5'
6847 5' -55.2 NC_001875.2 + 72557 0.67 0.860421
Target:  5'- --gGGCGcuGCGGGCGCGGGCgcgGGCGCUg -3'
miRNA:   3'- cugUCGC--CGUCUGUGUUUG---UCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 36822 0.67 0.860421
Target:  5'- cGCcGCGGCAGuuGCGcGCccGCGCCAc -3'
miRNA:   3'- cUGuCGCCGUCugUGUuUGu-CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 28298 0.67 0.860421
Target:  5'- uGCGGUGGCccuguuaaacGACAUAAAggaaAGCGCCAa -3'
miRNA:   3'- cUGUCGCCGu---------CUGUGUUUg---UCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 33213 0.67 0.860421
Target:  5'- -cCGGCaaacGCGGGCGCGGGCucgccgGGCGCCGu -3'
miRNA:   3'- cuGUCGc---CGUCUGUGUUUG------UCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 11913 0.67 0.860421
Target:  5'- cGGCGGCGaGCAGGuguuuUGCGcGCGGCGCg- -3'
miRNA:   3'- -CUGUCGC-CGUCU-----GUGUuUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 128007 0.67 0.860421
Target:  5'- aGGCuGCGGCc-GCGCcGGCGuGCGCCGa -3'
miRNA:   3'- -CUGuCGCCGucUGUGuUUGU-CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 114569 0.67 0.860421
Target:  5'- cAguGCGGCGGAUugugcgcgucgGCAAacGCGGCGUCu -3'
miRNA:   3'- cUguCGCCGUCUG-----------UGUU--UGUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 46451 0.67 0.860421
Target:  5'- uACGGUGGCGcgcaaauCGCAAACGGCguuuGCCAa -3'
miRNA:   3'- cUGUCGCCGUcu-----GUGUUUGUCG----CGGU- -5'
6847 5' -55.2 NC_001875.2 + 101857 0.67 0.859632
Target:  5'- cGACuagAGCGaGCuuGuugcaaaacaaaaACGCAAACAGCGCCGu -3'
miRNA:   3'- -CUG---UCGC-CGu-C-------------UGUGUUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 94623 0.67 0.852436
Target:  5'- uGCAGCGGCGG-CACAAcgugauACAuuacGCGCa- -3'
miRNA:   3'- cUGUCGCCGUCuGUGUU------UGU----CGCGgu -5'
6847 5' -55.2 NC_001875.2 + 7259 0.67 0.852436
Target:  5'- uGCAGCGGCcuGGCGCGggU--CGCCGa -3'
miRNA:   3'- cUGUCGCCGu-CUGUGUuuGucGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 32088 0.67 0.852436
Target:  5'- aACGGCGcCAaACGCAcACAGCGUCAc -3'
miRNA:   3'- cUGUCGCcGUcUGUGUuUGUCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.