miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6849 3' -65.3 NC_001875.2 + 88225 0.66 0.514717
Target:  5'- aUUGGGCaaaaACGGCgcaagCGGCGcgcGCCgCCGcUGCCg -3'
miRNA:   3'- -AGCCCG----UGCCG-----GCUGC---CGG-GGC-ACGG- -5'
6849 3' -65.3 NC_001875.2 + 13081 0.66 0.514717
Target:  5'- gUCGGGCGUGaGCaGGCcGCCCaccauGUGCCg -3'
miRNA:   3'- -AGCCCGUGC-CGgCUGcCGGGg----CACGG- -5'
6849 3' -65.3 NC_001875.2 + 17094 0.66 0.514717
Target:  5'- cCGGGCAa-GCCG-CGcGCCaCUGgcgGCCg -3'
miRNA:   3'- aGCCCGUgcCGGCuGC-CGG-GGCa--CGG- -5'
6849 3' -65.3 NC_001875.2 + 129464 0.66 0.514717
Target:  5'- cUGGGCGCaGCUGuCGGaCUCCaacaUGCCg -3'
miRNA:   3'- aGCCCGUGcCGGCuGCC-GGGGc---ACGG- -5'
6849 3' -65.3 NC_001875.2 + 64152 0.66 0.5138
Target:  5'- aCGGGCGC-GUCGAuccUGGCCCacuacuuugcgcaCGUGUCc -3'
miRNA:   3'- aGCCCGUGcCGGCU---GCCGGG-------------GCACGG- -5'
6849 3' -65.3 NC_001875.2 + 96860 0.66 0.51197
Target:  5'- aUGGGCgccacuucuagcggGCGGuCCaGCuGCCCCGUGgCg -3'
miRNA:   3'- aGCCCG--------------UGCC-GGcUGcCGGGGCACgG- -5'
6849 3' -65.3 NC_001875.2 + 45716 0.66 0.505584
Target:  5'- cCGcGCACuGCCGAUGGCCaCGU-CCa -3'
miRNA:   3'- aGCcCGUGcCGGCUGCCGGgGCAcGG- -5'
6849 3' -65.3 NC_001875.2 + 22812 0.66 0.505584
Target:  5'- aUCuGGCcguGCGGuCCGACGGCaCCGUcgGCg -3'
miRNA:   3'- -AGcCCG---UGCC-GGCUGCCGgGGCA--CGg -5'
6849 3' -65.3 NC_001875.2 + 87841 0.66 0.505584
Target:  5'- cUGGGCACGGCgccCGuCgGGCUguCCGUGgCg -3'
miRNA:   3'- aGCCCGUGCCG---GCuG-CCGG--GGCACgG- -5'
6849 3' -65.3 NC_001875.2 + 90915 0.66 0.505584
Target:  5'- aCGGGCACGcaGCCugcggugguGAUGGCCaCGcUGUCg -3'
miRNA:   3'- aGCCCGUGC--CGG---------CUGCCGGgGC-ACGG- -5'
6849 3' -65.3 NC_001875.2 + 127053 0.66 0.502858
Target:  5'- -aGGGCGcCGGCUGuaauagucaaagccGCGGCCaaCGgcgGCCa -3'
miRNA:   3'- agCCCGU-GCCGGC--------------UGCCGGg-GCa--CGG- -5'
6849 3' -65.3 NC_001875.2 + 10366 0.66 0.500138
Target:  5'- cCGGGCuACGGCCuGGCcgaaaacuuugaacGCCgCCGcGCCg -3'
miRNA:   3'- aGCCCG-UGCCGG-CUGc-------------CGG-GGCaCGG- -5'
6849 3' -65.3 NC_001875.2 + 29289 0.66 0.496522
Target:  5'- -gGGGCGCGGUCGuguGGCgugUCGUGCg -3'
miRNA:   3'- agCCCGUGCCGGCug-CCGg--GGCACGg -5'
6849 3' -65.3 NC_001875.2 + 117268 0.66 0.496522
Target:  5'- gUCGcuGcCGCGGCCGAugcgcuucacgaUGGCCgCGUGCg -3'
miRNA:   3'- -AGCc-C-GUGCCGGCU------------GCCGGgGCACGg -5'
6849 3' -65.3 NC_001875.2 + 17971 0.66 0.487533
Target:  5'- aUGGGCGUGGaCGACGuGCCCgcguucaaCGUGCg -3'
miRNA:   3'- aGCCCGUGCCgGCUGC-CGGG--------GCACGg -5'
6849 3' -65.3 NC_001875.2 + 89693 0.66 0.487533
Target:  5'- cCGcGCgACGGCCGACGcGUCCauUGCUa -3'
miRNA:   3'- aGCcCG-UGCCGGCUGC-CGGGgcACGG- -5'
6849 3' -65.3 NC_001875.2 + 115476 0.66 0.487533
Target:  5'- gCGGGCGCGGCCauuGGCGuCCuuGUucacuCCa -3'
miRNA:   3'- aGCCCGUGCCGG---CUGCcGGggCAc----GG- -5'
6849 3' -65.3 NC_001875.2 + 49855 0.66 0.487533
Target:  5'- gCGcGC-CGGCCGGCGcGCCU--UGCCg -3'
miRNA:   3'- aGCcCGuGCCGGCUGC-CGGGgcACGG- -5'
6849 3' -65.3 NC_001875.2 + 68624 0.66 0.487533
Target:  5'- aCGGGCgacGCGGgCGACGuaaaGCUgCGcUGCCc -3'
miRNA:   3'- aGCCCG---UGCCgGCUGC----CGGgGC-ACGG- -5'
6849 3' -65.3 NC_001875.2 + 128757 0.66 0.487533
Target:  5'- --cGGCGCGugcacGCCGugGGCgacCCCGgcgcGCCg -3'
miRNA:   3'- agcCCGUGC-----CGGCugCCG---GGGCa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.