miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6849 5' -50.6 NC_001875.2 + 260 0.76 0.726708
Target:  5'- ---cGGCGGGGUCGUUGuAUUGCUGgCg -3'
miRNA:   3'- ccuuUUGCCCCAGCAGC-UAAUGGCgG- -5'
6849 5' -50.6 NC_001875.2 + 4520 0.68 0.981432
Target:  5'- cGGAAAGCGGcgcaccgccggcugcGGUUccugCGGUUuggggGCCGCCa -3'
miRNA:   3'- -CCUUUUGCC---------------CCAGca--GCUAA-----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 7564 0.73 0.863165
Target:  5'- -aAAGGCGgcGGGUCGUCGAcgaccaacgcGCCGCCu -3'
miRNA:   3'- ccUUUUGC--CCCAGCAGCUaa--------UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 10855 0.71 0.917767
Target:  5'- uGGAAGguggacgacGCGGuGGccgCGUCGGUggcGCUGCCg -3'
miRNA:   3'- -CCUUU---------UGCC-CCa--GCAGCUAa--UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 18207 0.66 0.996681
Target:  5'- uGAuuACGcGGcGcCGUCGccgcucUUGCCGCCg -3'
miRNA:   3'- cCUuuUGC-CC-CaGCAGCu-----AAUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 24371 0.77 0.675336
Target:  5'- uGAAAACGGGGUCGcCG-UUGCugacgcauCGCCa -3'
miRNA:   3'- cCUUUUGCCCCAGCaGCuAAUG--------GCGG- -5'
6849 5' -50.6 NC_001875.2 + 29866 1.16 0.003982
Target:  5'- gGGAAAACGGGGUCGUCGAUUACCGCCa -3'
miRNA:   3'- -CCUUUUGCCCCAGCAGCUAAUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 31522 0.69 0.97317
Target:  5'- cGAAGGCGgcGGGUCGUUGAacggcaccacUUGCaCGCg -3'
miRNA:   3'- cCUUUUGC--CCCAGCAGCU----------AAUG-GCGg -5'
6849 5' -50.6 NC_001875.2 + 41385 0.73 0.853704
Target:  5'- aGGAAGACGcGGcCGUCGuuuucauguCCGCCa -3'
miRNA:   3'- -CCUUUUGCcCCaGCAGCuaau-----GGCGG- -5'
6849 5' -50.6 NC_001875.2 + 43322 0.79 0.540092
Target:  5'- ----cGCGcGGGUCGgcgUGGUUGCCGCCg -3'
miRNA:   3'- ccuuuUGC-CCCAGCa--GCUAAUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 47976 0.83 0.362836
Target:  5'- aGGAaccgugcGAGCGGGG-CGUCGA--GCCGCCc -3'
miRNA:   3'- -CCU-------UUUGCCCCaGCAGCUaaUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 54094 0.66 0.995447
Target:  5'- ----cACGGGGUCGaUGc--GCUGCCa -3'
miRNA:   3'- ccuuuUGCCCCAGCaGCuaaUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 56459 0.68 0.982665
Target:  5'- cGGu-GGCGGGGUCcgcgcgcguGUUGGUcAgCGCCa -3'
miRNA:   3'- -CCuuUUGCCCCAG---------CAGCUAaUgGCGG- -5'
6849 5' -50.6 NC_001875.2 + 57949 0.7 0.943905
Target:  5'- -cGAAACGcGGUCGUgCGGg-ACCGCCg -3'
miRNA:   3'- ccUUUUGCcCCAGCA-GCUaaUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 60913 0.7 0.952625
Target:  5'- cGAAAGCGGGGcCGgcgcUGAcgcACCGCUa -3'
miRNA:   3'- cCUUUUGCCCCaGCa---GCUaa-UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 64147 0.69 0.960383
Target:  5'- aGAAGACGGGcG-CGUCGAUccUgGCCc -3'
miRNA:   3'- cCUUUUGCCC-CaGCAGCUAauGgCGG- -5'
6849 5' -50.6 NC_001875.2 + 65778 0.71 0.923496
Target:  5'- cGGGcgGCGGcGcGUCGUCGuugAgCGCCa -3'
miRNA:   3'- -CCUuuUGCC-C-CAGCAGCuaaUgGCGG- -5'
6849 5' -50.6 NC_001875.2 + 79793 0.74 0.794757
Target:  5'- aGGuAGGGCGG-GUCGUCGG--GCCGCUu -3'
miRNA:   3'- -CC-UUUUGCCcCAGCAGCUaaUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 80120 0.66 0.995447
Target:  5'- uGAAGGCccauGGGUCGUCGcacucgUGCgCGUCg -3'
miRNA:   3'- cCUUUUGc---CCCAGCAGCua----AUG-GCGG- -5'
6849 5' -50.6 NC_001875.2 + 80484 0.74 0.821805
Target:  5'- -cAAAuCGGGGUCGUCGGaucggUUAaacuCCGCCa -3'
miRNA:   3'- ccUUUuGCCCCAGCAGCU-----AAU----GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.