miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 3' -55.7 NC_001875.2 + 85354 0.68 0.78917
Target:  5'- cGCCGacGCCGUggcgGCGUucGCGuUGGCAAACg- -3'
miRNA:   3'- -UGGC--UGGCG----CGCA--UGC-ACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 80652 0.69 0.741045
Target:  5'- cGCCaGaACCGCGcCGU-CGUgGGCAAACUg -3'
miRNA:   3'- -UGG-C-UGGCGC-GCAuGCA-CCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 78415 0.67 0.850156
Target:  5'- cGCUGGCCGUGUGcGCGcugGGCAacAACg- -3'
miRNA:   3'- -UGGCUGGCGCGCaUGCa--CCGU--UUGaa -5'
6853 3' -55.7 NC_001875.2 + 77986 0.66 0.887748
Target:  5'- gGCCGACgGUGCcaGCGUGcGCGAGa-- -3'
miRNA:   3'- -UGGCUGgCGCGcaUGCAC-CGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 77718 0.68 0.798393
Target:  5'- uACCGACCGgGCccguuugucauGUACGUGcGCuGGCa- -3'
miRNA:   3'- -UGGCUGGCgCG-----------CAUGCAC-CGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 71908 0.68 0.760659
Target:  5'- cGCCcACUGgGCGUGCGcgucGGCGAGCg- -3'
miRNA:   3'- -UGGcUGGCgCGCAUGCa---CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 69049 0.67 0.83364
Target:  5'- uUUGACCGCGCGcuuaugacuUGCGUG-CAAACg- -3'
miRNA:   3'- uGGCUGGCGCGC---------AUGCACcGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 68713 0.68 0.770293
Target:  5'- cGCCGGCCGCGCGccCGgccgcuaucccaUGGaCGAGCg- -3'
miRNA:   3'- -UGGCUGGCGCGCauGC------------ACC-GUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 67154 0.71 0.6386
Target:  5'- gGCUGuCUGCGCGggacaGCGUGGUGGACa- -3'
miRNA:   3'- -UGGCuGGCGCGCa----UGCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 66101 0.67 0.850156
Target:  5'- cGCCGAggcCCGCGCG-GCGggcGGCGAGg-- -3'
miRNA:   3'- -UGGCU---GGCGCGCaUGCa--CCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 65739 0.68 0.7798
Target:  5'- cGCCGcccGCCGCGCGggccucgGCGUauucgugcgcGGCGGGCg- -3'
miRNA:   3'- -UGGC---UGGCGCGCa------UGCA----------CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 65379 0.66 0.894586
Target:  5'- ---aACCGCGCGcGCGUGGUggGgCUg -3'
miRNA:   3'- uggcUGGCGCGCaUGCACCGuuU-GAa -5'
6853 3' -55.7 NC_001875.2 + 62285 0.69 0.721036
Target:  5'- uAUCGGCCauuaaCGCGUugGUGGCcAACg- -3'
miRNA:   3'- -UGGCUGGc----GCGCAugCACCGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 61956 0.75 0.420573
Target:  5'- gUCGACCgGCGCGccuagAUGUGGCAAACa- -3'
miRNA:   3'- uGGCUGG-CGCGCa----UGCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 59594 0.67 0.841996
Target:  5'- gGCCGACgUGCGCGagcacggGCGcuuUGGCGGAUUg -3'
miRNA:   3'- -UGGCUG-GCGCGCa------UGC---ACCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 58068 0.66 0.873377
Target:  5'- cGCUGACCGCGCuGUcgGCGgucUGGCGcguGCg- -3'
miRNA:   3'- -UGGCUGGCGCG-CA--UGC---ACCGUu--UGaa -5'
6853 3' -55.7 NC_001875.2 + 52207 0.66 0.887748
Target:  5'- -gCGACUGCGCGc-CGU-GCAAACUg -3'
miRNA:   3'- ugGCUGGCGCGCauGCAcCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 50547 0.66 0.873377
Target:  5'- cGCCGGCgGCGCGcgugucuuuUGCGgGGCAuuCg- -3'
miRNA:   3'- -UGGCUGgCGCGC---------AUGCaCCGUuuGaa -5'
6853 3' -55.7 NC_001875.2 + 50483 0.69 0.721036
Target:  5'- gACgCGGCCgGCGCGUGCGcgcGGCAccAGCg- -3'
miRNA:   3'- -UG-GCUGG-CGCGCAUGCa--CCGU--UUGaa -5'
6853 3' -55.7 NC_001875.2 + 47678 0.66 0.85811
Target:  5'- gGCCGcggcgcGCCGCGCGUuucucaacGCGgGGCAAguGCa- -3'
miRNA:   3'- -UGGC------UGGCGCGCA--------UGCaCCGUU--UGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.