miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 3' -55.7 NC_001875.2 + 47678 0.66 0.85811
Target:  5'- gGCCGcggcgcGCCGCGCGUuucucaacGCGgGGCAAguGCa- -3'
miRNA:   3'- -UGGC------UGGCGCGCA--------UGCaCCGUU--UGaa -5'
6853 3' -55.7 NC_001875.2 + 66101 0.67 0.850156
Target:  5'- cGCCGAggcCCGCGCG-GCGggcGGCGAGg-- -3'
miRNA:   3'- -UGGCU---GGCGCGCaUGCa--CCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 78415 0.67 0.850156
Target:  5'- cGCUGGCCGUGUGcGCGcugGGCAacAACg- -3'
miRNA:   3'- -UGGCUGGCGCGCaUGCa--CCGU--UUGaa -5'
6853 3' -55.7 NC_001875.2 + 11943 0.67 0.841996
Target:  5'- cGCCGACUGUGCGcGCGaccGGCGGcGCg- -3'
miRNA:   3'- -UGGCUGGCGCGCaUGCa--CCGUU-UGaa -5'
6853 3' -55.7 NC_001875.2 + 59594 0.67 0.841996
Target:  5'- gGCCGACgUGCGCGagcacggGCGcuuUGGCGGAUUg -3'
miRNA:   3'- -UGGCUG-GCGCGCa------UGC---ACCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 69049 0.67 0.83364
Target:  5'- uUUGACCGCGCGcuuaugacuUGCGUG-CAAACg- -3'
miRNA:   3'- uGGCUGGCGCGC---------AUGCACcGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 113575 0.67 0.825092
Target:  5'- -gCGACCGCGUGU-CGacGGUAAACa- -3'
miRNA:   3'- ugGCUGGCGCGCAuGCa-CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 118322 0.67 0.825092
Target:  5'- gGCCGGCCGCGCGcUGCa-GGUgauGAACc- -3'
miRNA:   3'- -UGGCUGGCGCGC-AUGcaCCG---UUUGaa -5'
6853 3' -55.7 NC_001875.2 + 98928 0.67 0.825092
Target:  5'- cGCCGGuuGCGCGUGCGcgacGCGcGCg- -3'
miRNA:   3'- -UGGCUggCGCGCAUGCac--CGUuUGaa -5'
6853 3' -55.7 NC_001875.2 + 1072 0.67 0.816363
Target:  5'- -gCGACCGCGCGgucagGCucaacaGGCAAGCg- -3'
miRNA:   3'- ugGCUGGCGCGCa----UGca----CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 77718 0.68 0.798393
Target:  5'- uACCGACCGgGCccguuugucauGUACGUGcGCuGGCa- -3'
miRNA:   3'- -UGGCUGGCgCG-----------CAUGCAC-CGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 9636 0.68 0.798393
Target:  5'- -gCGugCGCGCGccgUGCGUGuuucGCGAGCUUu -3'
miRNA:   3'- ugGCugGCGCGC---AUGCAC----CGUUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 38279 0.68 0.798393
Target:  5'- cUCGcAgCGCGCGUACGacgacgcggUGGCGAGCg- -3'
miRNA:   3'- uGGC-UgGCGCGCAUGC---------ACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 37353 0.68 0.798393
Target:  5'- cGCgCGGCCGCGCGcuCGUG-CGAACg- -3'
miRNA:   3'- -UG-GCUGGCGCGCauGCACcGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 120289 0.68 0.798393
Target:  5'- uUCGGCgGCGCGUACGaaauUGGCGguugGGCg- -3'
miRNA:   3'- uGGCUGgCGCGCAUGC----ACCGU----UUGaa -5'
6853 3' -55.7 NC_001875.2 + 129385 0.68 0.798393
Target:  5'- cGCCGAcCCGCGCGcaauUACGUGcaGCuAAACa- -3'
miRNA:   3'- -UGGCU-GGCGCGC----AUGCAC--CG-UUUGaa -5'
6853 3' -55.7 NC_001875.2 + 85354 0.68 0.78917
Target:  5'- cGCCGacGCCGUggcgGCGUucGCGuUGGCAAACg- -3'
miRNA:   3'- -UGGC--UGGCG----CGCA--UGC-ACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 65739 0.68 0.7798
Target:  5'- cGCCGcccGCCGCGCGggccucgGCGUauucgugcgcGGCGGGCg- -3'
miRNA:   3'- -UGGC---UGGCGCGCa------UGCA----------CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 89367 0.68 0.7798
Target:  5'- uGCgCGugCGCGUGUugcuGCGUGGCucGCc- -3'
miRNA:   3'- -UG-GCugGCGCGCA----UGCACCGuuUGaa -5'
6853 3' -55.7 NC_001875.2 + 68713 0.68 0.770293
Target:  5'- cGCCGGCCGCGCGccCGgccgcuaucccaUGGaCGAGCg- -3'
miRNA:   3'- -UGGCUGGCGCGCauGC------------ACC-GUUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.