Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 65784 | 0.68 | 0.686886 |
Target: 5'- -aGCACG-CGCGCgGCgucggCgCGCGGUGc -3' miRNA: 3'- caUGUGCaGCGCGaCGa----G-GCGCCACu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 43862 | 0.67 | 0.765297 |
Target: 5'- -cGgGCGUCGCGUacgcggGCgUuuGCGGUGGc -3' miRNA: 3'- caUgUGCAGCGCGa-----CG-AggCGCCACU- -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 24003 | 0.67 | 0.726739 |
Target: 5'- -cGCGCGUCGCaaggcgcaccggGCgcggGCUCgGCGGUc- -3' miRNA: 3'- caUGUGCAGCG------------CGa---CGAGgCGCCAcu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 43790 | 0.67 | 0.736523 |
Target: 5'- cGUACGCGggCGUuggcuggcuugGCUGCUgCGCGGg-- -3' miRNA: 3'- -CAUGUGCa-GCG-----------CGACGAgGCGCCacu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 22419 | 0.67 | 0.751986 |
Target: 5'- cGUACACGgccugcaUC-CGUUGCUCCauuucgggcguggcGCGGUGGu -3' miRNA: 3'- -CAUGUGC-------AGcGCGACGAGG--------------CGCCACU- -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 57582 | 0.67 | 0.765297 |
Target: 5'- -cGCgGCGUCGCGCUGUccagaagCGUGGUGu -3' miRNA: 3'- caUG-UGCAGCGCGACGag-----GCGCCACu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 100977 | 0.67 | 0.765297 |
Target: 5'- -aGCGCc-CGCGCUGCaggCCGCGGc-- -3' miRNA: 3'- caUGUGcaGCGCGACGa--GGCGCCacu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 434 | 0.67 | 0.755811 |
Target: 5'- uUGCAUGUC-CGCcaauguggucUGCagCGCGGUGAc -3' miRNA: 3'- cAUGUGCAGcGCG----------ACGagGCGCCACU- -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 85149 | 0.67 | 0.736523 |
Target: 5'- --cCACGUCGCGCaccuugaacucGCUCgaCGUGGUGGu -3' miRNA: 3'- cauGUGCAGCGCGa----------CGAG--GCGCCACU- -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 45219 | 0.67 | 0.746216 |
Target: 5'- cGUACACGUCGCGCgcgaacagGCggCGCGu--- -3' miRNA: 3'- -CAUGUGCAGCGCGa-------CGagGCGCcacu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 73133 | 0.67 | 0.746216 |
Target: 5'- uUGCGCGUCGCGCUGUaCaCGCu---- -3' miRNA: 3'- cAUGUGCAGCGCGACGaG-GCGccacu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 58062 | 0.67 | 0.736523 |
Target: 5'- uGUGCACGcugacCGCGCUG-UCgGCGGUc- -3' miRNA: 3'- -CAUGUGCa----GCGCGACgAGgCGCCAcu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 17058 | 0.67 | 0.765297 |
Target: 5'- -aACGCGa-GCaGCUGC-CCGCuGGUGAa -3' miRNA: 3'- caUGUGCagCG-CGACGaGGCG-CCACU- -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 64760 | 0.66 | 0.801976 |
Target: 5'- uUGCGCGcguagaucUCGCGCgccaGCUCCaGCGGcuUGGu -3' miRNA: 3'- cAUGUGC--------AGCGCGa---CGAGG-CGCC--ACU- -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 42686 | 0.66 | 0.810786 |
Target: 5'- cGUGCACGaaacCGCGCgGCg-CGCGGUu- -3' miRNA: 3'- -CAUGUGCa---GCGCGaCGagGCGCCAcu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 108989 | 0.66 | 0.810786 |
Target: 5'- -gACGCaaucaacucgGUCGCGCaaacGCUUCGCGGcGAa -3' miRNA: 3'- caUGUG----------CAGCGCGa---CGAGGCGCCaCU- -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 4901 | 0.66 | 0.810786 |
Target: 5'- --uCGCGcCGCaGCUGCUCC-CGGUc- -3' miRNA: 3'- cauGUGCaGCG-CGACGAGGcGCCAcu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 6970 | 0.66 | 0.810786 |
Target: 5'- --cCACGgCGCGCUGCUUgacaGCGGg-- -3' miRNA: 3'- cauGUGCaGCGCGACGAGg---CGCCacu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 23783 | 0.66 | 0.814266 |
Target: 5'- -cGCACGUugcccaggucgccgaCGUGUcGCUCCGCGGc-- -3' miRNA: 3'- caUGUGCA---------------GCGCGaCGAGGCGCCacu -5' |
|||||||
6853 | 5' | -57.9 | NC_001875.2 | + | 71919 | 0.66 | 0.816858 |
Target: 5'- cGUGCGCGUCGgcgagcgccuugacCGCgcGCUCCGCGc--- -3' miRNA: 3'- -CAUGUGCAGC--------------GCGa-CGAGGCGCcacu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home