Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 93042 | 0.69 | 0.615731 |
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Target: 5'- uGUACACGUaCGUGC-GCUUuuucuggcccaUGCGGUGGa -3' miRNA: 3'- -CAUGUGCA-GCGCGaCGAG-----------GCGCCACU- -5' |
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| 6853 | 5' | -57.9 | NC_001875.2 | + | 100127 | 0.69 | 0.653439 |
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Target: 5'- uUACAUGcUgGCGCUGUUugugucugccgcugUCGCGGUGAu -3' miRNA: 3'- cAUGUGC-AgCGCGACGA--------------GGCGCCACU- -5' |
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| 6853 | 5' | -57.9 | NC_001875.2 | + | 100977 | 0.67 | 0.765297 |
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Target: 5'- -aGCGCc-CGCGCUGCaggCCGCGGc-- -3' miRNA: 3'- caUGUGcaGCGCGACGa--GGCGCCacu -5' |
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| 6853 | 5' | -57.9 | NC_001875.2 | + | 108989 | 0.66 | 0.810786 |
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Target: 5'- -gACGCaaucaacucgGUCGCGCaaacGCUUCGCGGcGAa -3' miRNA: 3'- caUGUG----------CAGCGCGa---CGAGGCGCCaCU- -5' |
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| 6853 | 5' | -57.9 | NC_001875.2 | + | 110271 | 0.72 | 0.440516 |
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Target: 5'- cGUACGCGuccacgcuaauaUCGCGCgGC-CCGCGGUa- -3' miRNA: 3'- -CAUGUGC------------AGCGCGaCGaGGCGCCAcu -5' |
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| 6853 | 5' | -57.9 | NC_001875.2 | + | 111799 | 0.71 | 0.535231 |
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Target: 5'- gGUGCACGcggccgacggCGCcugGCUGCUCCGCG-UGAc -3' miRNA: 3'- -CAUGUGCa---------GCG---CGACGAGGCGCcACU- -5' |
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| 6853 | 5' | -57.9 | NC_001875.2 | + | 113090 | 0.73 | 0.39685 |
|
Target: 5'- -cGCGCGUCaGCGCcuuaGCcgCCGUGGUGAg -3' miRNA: 3'- caUGUGCAG-CGCGa---CGa-GGCGCCACU- -5' |
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| 6853 | 5' | -57.9 | NC_001875.2 | + | 121861 | 0.66 | 0.810786 |
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Target: 5'- cGUGCACGUaCGCcCUGUacacgaCGUGGUGGc -3' miRNA: 3'- -CAUGUGCA-GCGcGACGag----GCGCCACU- -5' |
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| 6853 | 5' | -57.9 | NC_001875.2 | + | 124911 | 0.66 | 0.801976 |
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Target: 5'- -cGCACGaCGCGUUGCUCaCGUacguguuggucaGGUGc -3' miRNA: 3'- caUGUGCaGCGCGACGAG-GCG------------CCACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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