miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 5' -57.9 NC_001875.2 + 64760 0.66 0.801976
Target:  5'- uUGCGCGcguagaucUCGCGCgccaGCUCCaGCGGcuUGGu -3'
miRNA:   3'- cAUGUGC--------AGCGCGa---CGAGG-CGCC--ACU- -5'
6853 5' -57.9 NC_001875.2 + 63249 0.66 0.819435
Target:  5'- -aACGCGUCGgGCUcggcggccagcgGCgccaCGCGGUGc -3'
miRNA:   3'- caUGUGCAGCgCGA------------CGag--GCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 58062 0.67 0.736523
Target:  5'- uGUGCACGcugacCGCGCUG-UCgGCGGUc- -3'
miRNA:   3'- -CAUGUGCa----GCGCGACgAGgCGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 57582 0.67 0.765297
Target:  5'- -cGCgGCGUCGCGCUGUccagaagCGUGGUGu -3'
miRNA:   3'- caUG-UGCAGCGCGACGag-----GCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 49684 0.68 0.666654
Target:  5'- uUGCACGaaaCGCGCUGgaCCGCGaGuUGGa -3'
miRNA:   3'- cAUGUGCa--GCGCGACgaGGCGC-C-ACU- -5'
6853 5' -57.9 NC_001875.2 + 49111 0.69 0.615731
Target:  5'- cGUGCGCGUaaaGCGCUGCcCCGUGc--- -3'
miRNA:   3'- -CAUGUGCAg--CGCGACGaGGCGCcacu -5'
6853 5' -57.9 NC_001875.2 + 45219 0.67 0.746216
Target:  5'- cGUACACGUCGCGCgcgaacagGCggCGCGu--- -3'
miRNA:   3'- -CAUGUGCAGCGCGa-------CGagGCGCcacu -5'
6853 5' -57.9 NC_001875.2 + 43862 0.67 0.765297
Target:  5'- -cGgGCGUCGCGUacgcggGCgUuuGCGGUGGc -3'
miRNA:   3'- caUgUGCAGCGCGa-----CG-AggCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 43790 0.67 0.736523
Target:  5'- cGUACGCGggCGUuggcuggcuugGCUGCUgCGCGGg-- -3'
miRNA:   3'- -CAUGUGCa-GCG-----------CGACGAgGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 43643 0.69 0.64631
Target:  5'- uGUACACGUUGUGC-GCgCCGuUGGUGc -3'
miRNA:   3'- -CAUGUGCAGCGCGaCGaGGC-GCCACu -5'
6853 5' -57.9 NC_001875.2 + 42686 0.66 0.810786
Target:  5'- cGUGCACGaaacCGCGCgGCg-CGCGGUu- -3'
miRNA:   3'- -CAUGUGCa---GCGCGaCGagGCGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 42586 0.66 0.801976
Target:  5'- -cGCACG-CGCGCgucaGCUCgGCGcUGGg -3'
miRNA:   3'- caUGUGCaGCGCGa---CGAGgCGCcACU- -5'
6853 5' -57.9 NC_001875.2 + 41810 0.68 0.69694
Target:  5'- -gGCACG-CGCGCcgGCgCCGCGGc-- -3'
miRNA:   3'- caUGUGCaGCGCGa-CGaGGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 40652 0.66 0.801976
Target:  5'- -cGCACG-CGCcgGCUGUUgCGCGGcGAc -3'
miRNA:   3'- caUGUGCaGCG--CGACGAgGCGCCaCU- -5'
6853 5' -57.9 NC_001875.2 + 40192 0.69 0.615731
Target:  5'- cGUACGCGUaCGgccaGCUGCUgCGCGGc-- -3'
miRNA:   3'- -CAUGUGCA-GCg---CGACGAgGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 35382 0.68 0.716875
Target:  5'- -aGCugGagGCGCUGCugUCCGUGGc-- -3'
miRNA:   3'- caUGugCagCGCGACG--AGGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 33853 0.68 0.663608
Target:  5'- -aACACGUCGCGCaccgUGCgcggCCGgcagaacggcguuuCGGUGGc -3'
miRNA:   3'- caUGUGCAGCGCG----ACGa---GGC--------------GCCACU- -5'
6853 5' -57.9 NC_001875.2 + 24003 0.67 0.726739
Target:  5'- -cGCGCGUCGCaaggcgcaccggGCgcggGCUCgGCGGUc- -3'
miRNA:   3'- caUGUGCAGCG------------CGa---CGAGgCGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 23783 0.66 0.814266
Target:  5'- -cGCACGUugcccaggucgccgaCGUGUcGCUCCGCGGc-- -3'
miRNA:   3'- caUGUGCA---------------GCGCGaCGAGGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 22419 0.67 0.751986
Target:  5'- cGUACACGgccugcaUC-CGUUGCUCCauuucgggcguggcGCGGUGGu -3'
miRNA:   3'- -CAUGUGC-------AGcGCGACGAGG--------------CGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.