Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 21893 | 1.09 | 0.001674 |
|
Target: 5'- cGUACACGUCGCGCUGCUCCGCGGUGAg -3' miRNA: 3'- -CAUGUGCAGCGCGACGAGGCGCCACU- -5' |
|||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 17058 | 0.67 | 0.765297 |
|
Target: 5'- -aACGCGa-GCaGCUGC-CCGCuGGUGAa -3' miRNA: 3'- caUGUGCagCG-CGACGaGGCG-CCACU- -5' |
|||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 12433 | 0.71 | 0.515626 |
|
Target: 5'- -gGC-CGUUGCG-UGCgcgCCGCGGUGGa -3' miRNA: 3'- caUGuGCAGCGCgACGa--GGCGCCACU- -5' |
|||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 6970 | 0.66 | 0.810786 |
|
Target: 5'- --cCACGgCGCGCUGCUUgacaGCGGg-- -3' miRNA: 3'- cauGUGCaGCGCGACGAGg---CGCCacu -5' |
|||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 6942 | 0.69 | 0.64631 |
|
Target: 5'- -aACGCGUCGUGCgUGCgCCGCGa--- -3' miRNA: 3'- caUGUGCAGCGCG-ACGaGGCGCcacu -5' |
|||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 4901 | 0.66 | 0.810786 |
|
Target: 5'- --uCGCGcCGCaGCUGCUCC-CGGUc- -3' miRNA: 3'- cauGUGCaGCG-CGACGAGGcGCCAcu -5' |
|||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 4497 | 0.75 | 0.297163 |
|
Target: 5'- -cACACGUUGCGuCUGCUCCGCuGcgGAa -3' miRNA: 3'- caUGUGCAGCGC-GACGAGGCGcCa-CU- -5' |
|||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 2944 | 0.7 | 0.595393 |
|
Target: 5'- -cGCGCGcuggCGCGCuUGCUCggcaGCGGUGu -3' miRNA: 3'- caUGUGCa---GCGCG-ACGAGg---CGCCACu -5' |
|||||||
| 6853 | 5' | -57.9 | NC_001875.2 | + | 434 | 0.67 | 0.755811 |
|
Target: 5'- uUGCAUGUC-CGCcaauguggucUGCagCGCGGUGAc -3' miRNA: 3'- cAUGUGCAGcGCG----------ACGagGCGCCACU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home