miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6854 5' -50.9 NC_001875.2 + 2925 0.66 0.99329
Target:  5'- cCGCCuCGUGcAAAuucaccGCGCGCuGGCGCGc -3'
miRNA:   3'- cGUGGuGCAU-UUU------UGUGUGcCCGCGC- -5'
6854 5' -50.9 NC_001875.2 + 29500 0.66 0.99329
Target:  5'- aGCugCaaacgaacaagACGUAcGAGCugACGaGCGCGa -3'
miRNA:   3'- -CGugG-----------UGCAUuUUUGugUGCcCGCGC- -5'
6854 5' -50.9 NC_001875.2 + 20266 0.66 0.99329
Target:  5'- cCACCAUGUGGG---ACACGguaaaGGCGCa -3'
miRNA:   3'- cGUGGUGCAUUUuugUGUGC-----CCGCGc -5'
6854 5' -50.9 NC_001875.2 + 97975 0.66 0.99329
Target:  5'- aCGCCGuucugcCGgcc--GCGCACGGuGCGCGa -3'
miRNA:   3'- cGUGGU------GCauuuuUGUGUGCC-CGCGC- -5'
6854 5' -50.9 NC_001875.2 + 125540 0.66 0.99329
Target:  5'- cCACCAUgcuuguugcgGUGcauuGGACGCACGGGCugaaccgcaGCGg -3'
miRNA:   3'- cGUGGUG----------CAUu---UUUGUGUGCCCG---------CGC- -5'
6854 5' -50.9 NC_001875.2 + 128484 0.66 0.99329
Target:  5'- cGCGCguuaucucaugCGCGUGAccGgACACGaGGCGCc -3'
miRNA:   3'- -CGUG-----------GUGCAUUuuUgUGUGC-CCGCGc -5'
6854 5' -50.9 NC_001875.2 + 104215 0.66 0.99329
Target:  5'- -aACCACGgccuAAAC-CACGcGGUGCu -3'
miRNA:   3'- cgUGGUGCauu-UUUGuGUGC-CCGCGc -5'
6854 5' -50.9 NC_001875.2 + 69724 0.66 0.99329
Target:  5'- cGCGCUaACGUuu--GCACGgaauCGGGCgGCGa -3'
miRNA:   3'- -CGUGG-UGCAuuuuUGUGU----GCCCG-CGC- -5'
6854 5' -50.9 NC_001875.2 + 101273 0.66 0.99329
Target:  5'- uGCugCGCau-GGAGCACAaaaaccGGCGCGa -3'
miRNA:   3'- -CGugGUGcauUUUUGUGUgc----CCGCGC- -5'
6854 5' -50.9 NC_001875.2 + 18141 0.66 0.99329
Target:  5'- aCGCCACuGUGAGuuACugGUGcGGCGCGc -3'
miRNA:   3'- cGUGGUG-CAUUUu-UGugUGC-CCGCGC- -5'
6854 5' -50.9 NC_001875.2 + 68835 0.66 0.99329
Target:  5'- uGCGCUgccugGCGgacgGGucGCACGCGuGCGCGa -3'
miRNA:   3'- -CGUGG-----UGCa---UUuuUGUGUGCcCGCGC- -5'
6854 5' -50.9 NC_001875.2 + 64962 0.66 0.99329
Target:  5'- gGCGCCGCGaauuAGGC-CGCGGucGUGCa -3'
miRNA:   3'- -CGUGGUGCauu-UUUGuGUGCC--CGCGc -5'
6854 5' -50.9 NC_001875.2 + 110275 0.66 0.99329
Target:  5'- cGCGuCCACGcUAAuauCGCGCGGccCGCGg -3'
miRNA:   3'- -CGU-GGUGC-AUUuuuGUGUGCCc-GCGC- -5'
6854 5' -50.9 NC_001875.2 + 114119 0.66 0.992264
Target:  5'- aGCACCACGguguu-UugGCuGGCGUa -3'
miRNA:   3'- -CGUGGUGCauuuuuGugUGcCCGCGc -5'
6854 5' -50.9 NC_001875.2 + 131600 0.66 0.992264
Target:  5'- cCGCCGCGcUGAAAaacguGCGCAauuugaUGGcGCGCGa -3'
miRNA:   3'- cGUGGUGC-AUUUU-----UGUGU------GCC-CGCGC- -5'
6854 5' -50.9 NC_001875.2 + 94864 0.66 0.992264
Target:  5'- -gGCCACGU----ACGC-CaGGCGCGu -3'
miRNA:   3'- cgUGGUGCAuuuuUGUGuGcCCGCGC- -5'
6854 5' -50.9 NC_001875.2 + 25482 0.66 0.992264
Target:  5'- uGCAUUGCGUcuAAAAAgAC-CaGGCGCGg -3'
miRNA:   3'- -CGUGGUGCA--UUUUUgUGuGcCCGCGC- -5'
6854 5' -50.9 NC_001875.2 + 58764 0.66 0.992264
Target:  5'- uGCG-CGCGUGGAGGCAaucccuguCGcGGCGCa -3'
miRNA:   3'- -CGUgGUGCAUUUUUGUgu------GC-CCGCGc -5'
6854 5' -50.9 NC_001875.2 + 31260 0.66 0.992264
Target:  5'- gGC-CCGCGUAcgcgucGAcGCAgACGaGGCGUGc -3'
miRNA:   3'- -CGuGGUGCAU------UUuUGUgUGC-CCGCGC- -5'
6854 5' -50.9 NC_001875.2 + 81337 0.66 0.992264
Target:  5'- cGUGCCGCGc---GGCGCGCuGGUGCc -3'
miRNA:   3'- -CGUGGUGCauuuUUGUGUGcCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.