miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6855 3' -56.9 NC_001875.2 + 86339 0.66 0.83364
Target:  5'- ---uUGGCuGCCGUGGagGCAcUGUUGCa -3'
miRNA:   3'- uuccACCG-CGGCACUg-CGUaACGACG- -5'
6855 3' -56.9 NC_001875.2 + 126219 0.66 0.825092
Target:  5'- cAGGcgaauuuaUGGCaaucaauguuGCCGUGcACGCAUcUGUUGCg -3'
miRNA:   3'- uUCC--------ACCG----------CGGCAC-UGCGUA-ACGACG- -5'
6855 3' -56.9 NC_001875.2 + 34360 0.66 0.825092
Target:  5'- ----cGGCGCaagaGACGCAgUUGCUGCc -3'
miRNA:   3'- uuccaCCGCGgca-CUGCGU-AACGACG- -5'
6855 3' -56.9 NC_001875.2 + 126618 0.66 0.825092
Target:  5'- -uGGUGGCGCaugucgauCGUGGCGUcggGC-GCg -3'
miRNA:   3'- uuCCACCGCG--------GCACUGCGuaaCGaCG- -5'
6855 3' -56.9 NC_001875.2 + 101968 0.66 0.825092
Target:  5'- -cGGUGGCGaaCGcGACGCAggcGUUGUg -3'
miRNA:   3'- uuCCACCGCg-GCaCUGCGUaa-CGACG- -5'
6855 3' -56.9 NC_001875.2 + 101407 0.66 0.816363
Target:  5'- cAGcUGcGCGuuG-GACGCuUUGCUGCa -3'
miRNA:   3'- uUCcAC-CGCggCaCUGCGuAACGACG- -5'
6855 3' -56.9 NC_001875.2 + 79290 0.66 0.816363
Target:  5'- --uGUGGCGCgCGUGcGCGCAUacugGC-GCg -3'
miRNA:   3'- uucCACCGCG-GCAC-UGCGUAa---CGaCG- -5'
6855 3' -56.9 NC_001875.2 + 72708 0.66 0.816363
Target:  5'- -cGGUGcGCGCCGUuaauuGCGC-UUGC-GCg -3'
miRNA:   3'- uuCCAC-CGCGGCAc----UGCGuAACGaCG- -5'
6855 3' -56.9 NC_001875.2 + 49121 0.66 0.806561
Target:  5'- aAAGGUacaccuugGGCGCUGUGuguaaagGCGCGUuugGCUuGCa -3'
miRNA:   3'- -UUCCA--------CCGCGGCAC-------UGCGUAa--CGA-CG- -5'
6855 3' -56.9 NC_001875.2 + 63883 0.66 0.80204
Target:  5'- gAAGGUguggaauaguaagaaGcGCGCCGUGGCGCc--GCcGCa -3'
miRNA:   3'- -UUCCA---------------C-CGCGGCACUGCGuaaCGaCG- -5'
6855 3' -56.9 NC_001875.2 + 100600 0.66 0.798393
Target:  5'- cGGGccgGGCGCCG-GcCGCGgccGCUGUu -3'
miRNA:   3'- uUCCa--CCGCGGCaCuGCGUaa-CGACG- -5'
6855 3' -56.9 NC_001875.2 + 44009 0.66 0.798393
Target:  5'- ----gGGCGCCGUGcccaGCGU-GCUGUa -3'
miRNA:   3'- uuccaCCGCGGCACug--CGUAaCGACG- -5'
6855 3' -56.9 NC_001875.2 + 35372 0.66 0.78917
Target:  5'- cAGGUGGagcaGCUG-GAgGCGcUGCUGUc -3'
miRNA:   3'- uUCCACCg---CGGCaCUgCGUaACGACG- -5'
6855 3' -56.9 NC_001875.2 + 98899 0.67 0.77791
Target:  5'- cGGGaaucgauUGGCGCCGUagcucgcGGCGCcg-GUUGCg -3'
miRNA:   3'- uUCC-------ACCGCGGCA-------CUGCGuaaCGACG- -5'
6855 3' -56.9 NC_001875.2 + 26800 0.67 0.776962
Target:  5'- gAGGGUGGUGuguCCGUcaaacaaguaccacGugGCGUuuucgucgcgcUGCUGCa -3'
miRNA:   3'- -UUCCACCGC---GGCA--------------CugCGUA-----------ACGACG- -5'
6855 3' -56.9 NC_001875.2 + 563 0.67 0.760659
Target:  5'- -cGGUGGCGuuGUGcaagucguucaACGCGUcgcacaacUGCcGCa -3'
miRNA:   3'- uuCCACCGCggCAC-----------UGCGUA--------ACGaCG- -5'
6855 3' -56.9 NC_001875.2 + 27632 0.67 0.760659
Target:  5'- --cGUGGUuuagGCCGUGguucGCGCAUUGUcGCa -3'
miRNA:   3'- uucCACCG----CGGCAC----UGCGUAACGaCG- -5'
6855 3' -56.9 NC_001875.2 + 37420 0.67 0.750906
Target:  5'- --cGUGGaagagGCCGUGGCGCAgucgGCgGCc -3'
miRNA:   3'- uucCACCg----CGGCACUGCGUaa--CGaCG- -5'
6855 3' -56.9 NC_001875.2 + 82253 0.68 0.731085
Target:  5'- -uGGUGGUagcGCuCGUcGGCGCGcaGCUGCu -3'
miRNA:   3'- uuCCACCG---CG-GCA-CUGCGUaaCGACG- -5'
6855 3' -56.9 NC_001875.2 + 57308 0.68 0.721036
Target:  5'- cGGGcGcGCGUCGUcggcGACGCaAUUGUUGCg -3'
miRNA:   3'- uUCCaC-CGCGGCA----CUGCG-UAACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.