miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6855 5' -48 NC_001875.2 + 93266 0.66 0.999615
Target:  5'- cCCGUguagAGCAGGAuGGg---CACGccGCGCCg -3'
miRNA:   3'- -GGCG----UUGUUUU-CCaaaaGUGC--CGCGG- -5'
6855 5' -48 NC_001875.2 + 32242 0.66 0.999615
Target:  5'- aCUGCGGCAAAuuGGcug-CGCGcCGCCu -3'
miRNA:   3'- -GGCGUUGUUUu-CCaaaaGUGCcGCGG- -5'
6855 5' -48 NC_001875.2 + 73315 0.66 0.999615
Target:  5'- gCCGCGACGAcgcgacacAGG---UC-CGGCGCa -3'
miRNA:   3'- -GGCGUUGUUu-------UCCaaaAGuGCCGCGg -5'
6855 5' -48 NC_001875.2 + 39300 0.66 0.999615
Target:  5'- uCCGCAaguugguguGCAGAgaaaacgcgccGGGcgcgCACGaGCGCCc -3'
miRNA:   3'- -GGCGU---------UGUUU-----------UCCaaaaGUGC-CGCGG- -5'
6855 5' -48 NC_001875.2 + 39971 0.66 0.999615
Target:  5'- gCCGCAcCAGcAGGcgccCugGGgGCCc -3'
miRNA:   3'- -GGCGUuGUUuUCCaaaaGugCCgCGG- -5'
6855 5' -48 NC_001875.2 + 50924 0.66 0.999615
Target:  5'- gCCGaGGCugu-GGUUUUUcaGGCGCCg -3'
miRNA:   3'- -GGCgUUGuuuuCCAAAAGugCCGCGG- -5'
6855 5' -48 NC_001875.2 + 126754 0.66 0.999516
Target:  5'- gCGCAGCcccauuAGGUggUCgACGuGCGCg -3'
miRNA:   3'- gGCGUUGuuu---UCCAaaAG-UGC-CGCGg -5'
6855 5' -48 NC_001875.2 + 124789 0.66 0.999516
Target:  5'- gCCGCAGCGGAaccAGGccgacaaGCGcGCgGCCa -3'
miRNA:   3'- -GGCGUUGUUU---UCCaaaag--UGC-CG-CGG- -5'
6855 5' -48 NC_001875.2 + 131522 0.66 0.999516
Target:  5'- gUGCAGCGGcuGGaa---GCGGCGCa -3'
miRNA:   3'- gGCGUUGUUuuCCaaaagUGCCGCGg -5'
6855 5' -48 NC_001875.2 + 88500 0.66 0.999516
Target:  5'- gCGCAAguAcguGGUg--CGCGGCGgCa -3'
miRNA:   3'- gGCGUUguUuu-CCAaaaGUGCCGCgG- -5'
6855 5' -48 NC_001875.2 + 82377 0.66 0.999516
Target:  5'- gCGCGcGCGGAAc-----CACGGCGCCg -3'
miRNA:   3'- gGCGU-UGUUUUccaaaaGUGCCGCGG- -5'
6855 5' -48 NC_001875.2 + 3192 0.66 0.999516
Target:  5'- gCGCAcCAGAgacAGGUU---GCGGCGgCg -3'
miRNA:   3'- gGCGUuGUUU---UCCAAaagUGCCGCgG- -5'
6855 5' -48 NC_001875.2 + 89804 0.66 0.999516
Target:  5'- aCGCAGCGcgGGcGgcagaUCGUGGUGCCg -3'
miRNA:   3'- gGCGUUGUuuUC-Caaa--AGUGCCGCGG- -5'
6855 5' -48 NC_001875.2 + 110480 0.66 0.999516
Target:  5'- aCCGCAAguAccGcGUcaagcaCACGGCGCUg -3'
miRNA:   3'- -GGCGUUguUuuC-CAaaa---GUGCCGCGG- -5'
6855 5' -48 NC_001875.2 + 85233 0.66 0.999516
Target:  5'- gCCGCAugucgACGAGcgcGGGUUccgCGCucGGCGCg -3'
miRNA:   3'- -GGCGU-----UGUUU---UCCAAaa-GUG--CCGCGg -5'
6855 5' -48 NC_001875.2 + 74130 0.66 0.999516
Target:  5'- uUCGCcuagAGCuggaguucGAGGg---CGCGGCGCCc -3'
miRNA:   3'- -GGCG----UUGuu------UUCCaaaaGUGCCGCGG- -5'
6855 5' -48 NC_001875.2 + 123578 0.66 0.999516
Target:  5'- gCCGCAgaACAAAAaccacGcGUUUUCGuacgUGGCGCa -3'
miRNA:   3'- -GGCGU--UGUUUU-----C-CAAAAGU----GCCGCGg -5'
6855 5' -48 NC_001875.2 + 96015 0.66 0.999505
Target:  5'- gUGCGACAGcgagauuGGGGUggacuacgUUCGCGGCaaGCg -3'
miRNA:   3'- gGCGUUGUU-------UUCCAa-------AAGUGCCG--CGg -5'
6855 5' -48 NC_001875.2 + 17781 0.66 0.999505
Target:  5'- uUGCAguACAGcuuguacAAGGUgg-CgACGGUGCCg -3'
miRNA:   3'- gGCGU--UGUU-------UUCCAaaaG-UGCCGCGG- -5'
6855 5' -48 NC_001875.2 + 120034 0.66 0.999483
Target:  5'- aCCGCAAaguGcuuugucuuuuuuuGGGUggUCAgGcGCGCCg -3'
miRNA:   3'- -GGCGUUguuU--------------UCCAaaAGUgC-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.