miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6857 3' -58.5 NC_001875.2 + 54805 0.66 0.760763
Target:  5'- cUAGCaccgCGACGCGGCUGCcg-AGCccGAa -3'
miRNA:   3'- -AUCG----GCUGCGCCGACGcugUCGuaCU- -5'
6857 3' -58.5 NC_001875.2 + 95546 0.66 0.760763
Target:  5'- -uGCCuuGAgGUGGCUGCGGC-GCAUu- -3'
miRNA:   3'- auCGG--CUgCGCCGACGCUGuCGUAcu -5'
6857 3' -58.5 NC_001875.2 + 57536 0.66 0.760763
Target:  5'- gUAGCUaGAgcaGCGGUUGCGGCA-CGUGGc -3'
miRNA:   3'- -AUCGG-CUg--CGCCGACGCUGUcGUACU- -5'
6857 3' -58.5 NC_001875.2 + 36094 0.66 0.760763
Target:  5'- -cGCUcGCGCGGCagcacGCGGCGGCGg-- -3'
miRNA:   3'- auCGGcUGCGCCGa----CGCUGUCGUacu -5'
6857 3' -58.5 NC_001875.2 + 113181 0.66 0.759804
Target:  5'- cAGCCgcaccguGACGC-GCUGCGACgugcccaccAGCAUGc -3'
miRNA:   3'- aUCGG-------CUGCGcCGACGCUG---------UCGUACu -5'
6857 3' -58.5 NC_001875.2 + 102001 0.66 0.759804
Target:  5'- cGGCguGCGCGGCgGCGguggacuGCAGCGUGc -3'
miRNA:   3'- aUCGgcUGCGCCGaCGC-------UGUCGUACu -5'
6857 3' -58.5 NC_001875.2 + 40206 0.66 0.741389
Target:  5'- cAGCUGcuGCGCGGCUauucgGCG-CAGCAa-- -3'
miRNA:   3'- aUCGGC--UGCGCCGA-----CGCuGUCGUacu -5'
6857 3' -58.5 NC_001875.2 + 114496 0.66 0.741389
Target:  5'- cAGCacucuGACGCGGUcgcGCGGCGGCGc-- -3'
miRNA:   3'- aUCGg----CUGCGCCGa--CGCUGUCGUacu -5'
6857 3' -58.5 NC_001875.2 + 41438 0.66 0.738448
Target:  5'- gGGCCGcugcgcgcgcacagGCGcCGGUUGCGGCgcgcgcGGCGUGu -3'
miRNA:   3'- aUCGGC--------------UGC-GCCGACGCUG------UCGUACu -5'
6857 3' -58.5 NC_001875.2 + 70318 0.66 0.731553
Target:  5'- aUGGCCGccaagcgcgagcACGCGGaCUGCGGCgccgAGCcgGc -3'
miRNA:   3'- -AUCGGC------------UGCGCC-GACGCUG----UCGuaCu -5'
6857 3' -58.5 NC_001875.2 + 129998 0.66 0.722625
Target:  5'- gUGGCCaaaucuaccauugGCGGCgGCGGCGGCAUGc -3'
miRNA:   3'- -AUCGGcug----------CGCCGaCGCUGUCGUACu -5'
6857 3' -58.5 NC_001875.2 + 89261 0.67 0.711628
Target:  5'- gAGCUGACGCGcGCgUGCGccgaccuggcGCGGC-UGGg -3'
miRNA:   3'- aUCGGCUGCGC-CG-ACGC----------UGUCGuACU- -5'
6857 3' -58.5 NC_001875.2 + 85215 0.67 0.711628
Target:  5'- gGGCCGccGCGCGGUaGCG-CcGCAUGu -3'
miRNA:   3'- aUCGGC--UGCGCCGaCGCuGuCGUACu -5'
6857 3' -58.5 NC_001875.2 + 104570 0.67 0.711628
Target:  5'- gUGGCUGGgGCGGUUGCG-CAaCAUGc -3'
miRNA:   3'- -AUCGGCUgCGCCGACGCuGUcGUACu -5'
6857 3' -58.5 NC_001875.2 + 69257 0.67 0.711628
Target:  5'- -cGCUGGgcCGCGGCUcgagccgugGCGGCGGCAa-- -3'
miRNA:   3'- auCGGCU--GCGCCGA---------CGCUGUCGUacu -5'
6857 3' -58.5 NC_001875.2 + 73686 0.67 0.711628
Target:  5'- cGGCUGcuGCgGCGGCUGCuGCGGCGg-- -3'
miRNA:   3'- aUCGGC--UG-CGCCGACGcUGUCGUacu -5'
6857 3' -58.5 NC_001875.2 + 65754 0.67 0.707608
Target:  5'- gGGCCucggcguauucguGCGCGGCggGCGGCGGCGc-- -3'
miRNA:   3'- aUCGGc------------UGCGCCGa-CGCUGUCGUacu -5'
6857 3' -58.5 NC_001875.2 + 100154 0.67 0.707608
Target:  5'- -cGCUGuCGCGGUgaucacggugggcGCGAgCGGCAUGAa -3'
miRNA:   3'- auCGGCuGCGCCGa------------CGCU-GUCGUACU- -5'
6857 3' -58.5 NC_001875.2 + 73785 0.67 0.701558
Target:  5'- gGGuuGugGCGGCgGCGGCuggaacGGCAg-- -3'
miRNA:   3'- aUCggCugCGCCGaCGCUG------UCGUacu -5'
6857 3' -58.5 NC_001875.2 + 69230 0.67 0.701558
Target:  5'- cGGgCGACGCGcGCUGUgccgacuugcccGACGGCAcGGg -3'
miRNA:   3'- aUCgGCUGCGC-CGACG------------CUGUCGUaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.