miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6857 5' -55.5 NC_001875.2 + 69928 0.66 0.908469
Target:  5'- gUUCGCGuuuccgccguGACaCGGCG-CGUGUCgGGc -3'
miRNA:   3'- aAAGUGCu---------CUG-GCCGCaGCACAGgUC- -5'
6857 5' -55.5 NC_001875.2 + 88759 0.66 0.908469
Target:  5'- ---gGCGAGuuCGaG-GUCGUGUCCAGc -3'
miRNA:   3'- aaagUGCUCugGC-CgCAGCACAGGUC- -5'
6857 5' -55.5 NC_001875.2 + 15849 0.66 0.888885
Target:  5'- --cCGCGAGACCaGCGUgGUGcUCAu -3'
miRNA:   3'- aaaGUGCUCUGGcCGCAgCACaGGUc -5'
6857 5' -55.5 NC_001875.2 + 57400 0.66 0.881887
Target:  5'- --gCACGcGAUUGGCGUUGUgcaaaaacuuGUCCAGc -3'
miRNA:   3'- aaaGUGCuCUGGCCGCAGCA----------CAGGUC- -5'
6857 5' -55.5 NC_001875.2 + 28623 0.67 0.859549
Target:  5'- --gCGCaAGGCCGGCGUcagcgugccCGUGUCguGg -3'
miRNA:   3'- aaaGUGcUCUGGCCGCA---------GCACAGguC- -5'
6857 5' -55.5 NC_001875.2 + 112051 0.67 0.851673
Target:  5'- cUUUCACGucGGCC-GCGUCGUcuUCCAGc -3'
miRNA:   3'- -AAAGUGCu-CUGGcCGCAGCAc-AGGUC- -5'
6857 5' -55.5 NC_001875.2 + 120637 0.67 0.835315
Target:  5'- cUUCuCGuccGGCgCGGCGUCGUGcUCCAc -3'
miRNA:   3'- aAAGuGCu--CUG-GCCGCAGCAC-AGGUc -5'
6857 5' -55.5 NC_001875.2 + 90034 0.67 0.835315
Target:  5'- --cCGCGGcGCCGGCGcgCGUG-CCGGc -3'
miRNA:   3'- aaaGUGCUcUGGCCGCa-GCACaGGUC- -5'
6857 5' -55.5 NC_001875.2 + 89199 0.68 0.826848
Target:  5'- --aCGCG-GACCGGCugggCGUG-CCAGa -3'
miRNA:   3'- aaaGUGCuCUGGCCGca--GCACaGGUC- -5'
6857 5' -55.5 NC_001875.2 + 120747 0.68 0.818199
Target:  5'- --gCGcCGAGACgGG-GcCGUGUCCAGg -3'
miRNA:   3'- aaaGU-GCUCUGgCCgCaGCACAGGUC- -5'
6857 5' -55.5 NC_001875.2 + 19942 0.68 0.809377
Target:  5'- --aCACGGagcGGCCGGCG-CGacgGUCCGGc -3'
miRNA:   3'- aaaGUGCU---CUGGCCGCaGCa--CAGGUC- -5'
6857 5' -55.5 NC_001875.2 + 128323 0.68 0.791246
Target:  5'- -gUCACGuAGGCCGGCcuuaucggGUCGcGUCCu- -3'
miRNA:   3'- aaAGUGC-UCUGGCCG--------CAGCaCAGGuc -5'
6857 5' -55.5 NC_001875.2 + 57565 0.72 0.589948
Target:  5'- gUUCGCGcguaaaccGGCgCGGCGUCGcgcUGUCCAGa -3'
miRNA:   3'- aAAGUGCu-------CUG-GCCGCAGC---ACAGGUC- -5'
6857 5' -55.5 NC_001875.2 + 20763 0.73 0.528933
Target:  5'- uUUUCACGGcGCCGGCGUCG--UCCAc -3'
miRNA:   3'- -AAAGUGCUcUGGCCGCAGCacAGGUc -5'
6857 5' -55.5 NC_001875.2 + 95367 0.74 0.479931
Target:  5'- --aCGCGucggcGGAaaaCGGCGUCGUGUCCAa -3'
miRNA:   3'- aaaGUGC-----UCUg--GCCGCAGCACAGGUc -5'
6857 5' -55.5 NC_001875.2 + 3334 0.77 0.317968
Target:  5'- ---aGCGGGACgGGCGccUCGUGUCCGGu -3'
miRNA:   3'- aaagUGCUCUGgCCGC--AGCACAGGUC- -5'
6857 5' -55.5 NC_001875.2 + 17722 1.05 0.004833
Target:  5'- cUUUCACGAGACCGGCGUCGUGUCCAGc -3'
miRNA:   3'- -AAAGUGCUCUGGCCGCAGCACAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.