miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 5' -52 NC_001875.2 + 6902 0.67 0.961867
Target:  5'- cAGAAUAGUGCACGagcaccugaccaacaCGUaCGUGAGCa -3'
miRNA:   3'- -UUUUAUCGUGUGCg--------------GCAaGCGCUCGc -5'
6858 5' -52 NC_001875.2 + 65692 0.67 0.961867
Target:  5'- ----cAGCACgaucACGCCGgccgaccacuguucCGCGGGCGg -3'
miRNA:   3'- uuuuaUCGUG----UGCGGCaa------------GCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 3030 0.67 0.961502
Target:  5'- cAAGUuGUACACGCCGUUgggcagCGCGuaagaGGCGc -3'
miRNA:   3'- uUUUAuCGUGUGCGGCAA------GCGC-----UCGC- -5'
6858 5' -52 NC_001875.2 + 93044 0.67 0.961502
Target:  5'- ----gAGCAauugcaGCGCCGaaUUGCGGGCGc -3'
miRNA:   3'- uuuuaUCGUg-----UGCGGCa-AGCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 98909 0.67 0.961502
Target:  5'- ---uUGGCGCcguagcucgcgGCGCCGguugCGCGuGCGc -3'
miRNA:   3'- uuuuAUCGUG-----------UGCGGCaa--GCGCuCGC- -5'
6858 5' -52 NC_001875.2 + 125153 0.67 0.960396
Target:  5'- cAAAUGGCGUGCGCCGUcgUCGCcaaguucauuuaccGAGUGu -3'
miRNA:   3'- uUUUAUCGUGUGCGGCA--AGCG--------------CUCGC- -5'
6858 5' -52 NC_001875.2 + 80265 0.67 0.95773
Target:  5'- --cGUGGC-CACGCCGcgcgUCGUGAaCGg -3'
miRNA:   3'- uuuUAUCGuGUGCGGCa---AGCGCUcGC- -5'
6858 5' -52 NC_001875.2 + 39636 0.67 0.95773
Target:  5'- -cAAUGGCGCGCagcgaaCCGcgCGCGAGUu -3'
miRNA:   3'- uuUUAUCGUGUGc-----GGCaaGCGCUCGc -5'
6858 5' -52 NC_001875.2 + 81704 0.67 0.95773
Target:  5'- ----cAGCACAC-CCGcgCGCaccGAGCGa -3'
miRNA:   3'- uuuuaUCGUGUGcGGCaaGCG---CUCGC- -5'
6858 5' -52 NC_001875.2 + 80002 0.67 0.953712
Target:  5'- -uGGUAGUGCuCGCCGUUaaacaCGAGCGu -3'
miRNA:   3'- uuUUAUCGUGuGCGGCAAgc---GCUCGC- -5'
6858 5' -52 NC_001875.2 + 52542 0.67 0.953712
Target:  5'- ----aAGCACGCGCCaGUaUGCGcGCa -3'
miRNA:   3'- uuuuaUCGUGUGCGG-CAaGCGCuCGc -5'
6858 5' -52 NC_001875.2 + 47094 0.67 0.953712
Target:  5'- cGAAU-GCAUugaGCGCUGgaagCGCGGGCGc -3'
miRNA:   3'- uUUUAuCGUG---UGCGGCaa--GCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 45219 0.67 0.953712
Target:  5'- -----cGUACACGUCGcgCGCGAacagGCGg -3'
miRNA:   3'- uuuuauCGUGUGCGGCaaGCGCU----CGC- -5'
6858 5' -52 NC_001875.2 + 77415 0.67 0.953712
Target:  5'- -----cGcCACGCGCUGUUCGgcgacaaGAGCGg -3'
miRNA:   3'- uuuuauC-GUGUGCGGCAAGCg------CUCGC- -5'
6858 5' -52 NC_001875.2 + 65778 0.67 0.949444
Target:  5'- uGGGcgAGCACGCGCgCGgcgUCgGCGcGCGg -3'
miRNA:   3'- -UUUuaUCGUGUGCG-GCa--AG-CGCuCGC- -5'
6858 5' -52 NC_001875.2 + 105597 0.67 0.949444
Target:  5'- -cGGUGG-ACACGCCGcagCGCcaaGAGCGg -3'
miRNA:   3'- uuUUAUCgUGUGCGGCaa-GCG---CUCGC- -5'
6858 5' -52 NC_001875.2 + 59938 0.67 0.944922
Target:  5'- -----cGCGCACGCCca--GUGGGCGg -3'
miRNA:   3'- uuuuauCGUGUGCGGcaagCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 30456 0.67 0.944922
Target:  5'- ---cUGGCGCGCGuuGcgCGCGuuuGCa -3'
miRNA:   3'- uuuuAUCGUGUGCggCaaGCGCu--CGc -5'
6858 5' -52 NC_001875.2 + 31589 0.67 0.944922
Target:  5'- aAGGGUGGUGuccgGCGCCGUgcCGUGGGCGg -3'
miRNA:   3'- -UUUUAUCGUg---UGCGGCAa-GCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 113164 0.67 0.944922
Target:  5'- -----cGCGCGCGCCGUUUGauauGGCa -3'
miRNA:   3'- uuuuauCGUGUGCGGCAAGCgc--UCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.