miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6859 3' -47.7 NC_001875.2 + 28908 0.66 0.999102
Target:  5'- cCGCCcccacaacAAGAccGUGGC-CGCGUaUUUCGAGa -3'
miRNA:   3'- -GCGG--------UUUU--UAUCGuGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 93555 0.66 0.999102
Target:  5'- uCGCCAccgcGucGUcGUACGCGCgcugCGAGg -3'
miRNA:   3'- -GCGGU----UuuUAuCGUGCGCGaaa-GCUC- -5'
6859 3' -47.7 NC_001875.2 + 100129 0.66 0.999102
Target:  5'- uCGCCGAAAGUaaugcgccGGCGgCGCGCaagCGGc -3'
miRNA:   3'- -GCGGUUUUUA--------UCGU-GCGCGaaaGCUc -5'
6859 3' -47.7 NC_001875.2 + 66373 0.66 0.999102
Target:  5'- gCGUCGAGGuucgAGCACGUGU--UCGAc -3'
miRNA:   3'- -GCGGUUUUua--UCGUGCGCGaaAGCUc -5'
6859 3' -47.7 NC_001875.2 + 41339 0.66 0.999102
Target:  5'- aCGCCGugcAAGUGGgcCGCGCGCagUUUGAa -3'
miRNA:   3'- -GCGGUu--UUUAUC--GUGCGCGa-AAGCUc -5'
6859 3' -47.7 NC_001875.2 + 113157 0.66 0.999102
Target:  5'- aCGCCGGc----GCGCGCGCcgUUUGAu -3'
miRNA:   3'- -GCGGUUuuuauCGUGCGCGa-AAGCUc -5'
6859 3' -47.7 NC_001875.2 + 118282 0.66 0.998896
Target:  5'- aCGCCAcgcaAGAGUGGCugcagcugGCGCGCUUg---- -3'
miRNA:   3'- -GCGGU----UUUUAUCG--------UGCGCGAAagcuc -5'
6859 3' -47.7 NC_001875.2 + 66100 0.66 0.998896
Target:  5'- aCGCCGA----GGCcCGCGCgg-CGGGc -3'
miRNA:   3'- -GCGGUUuuuaUCGuGCGCGaaaGCUC- -5'
6859 3' -47.7 NC_001875.2 + 114746 0.66 0.998896
Target:  5'- cCGCCA---GUGGCGCGCgGCUUg---- -3'
miRNA:   3'- -GCGGUuuuUAUCGUGCG-CGAAagcuc -5'
6859 3' -47.7 NC_001875.2 + 81913 0.67 0.998651
Target:  5'- aGCUGAu--UAGCGCGCGCggcucCGAc -3'
miRNA:   3'- gCGGUUuuuAUCGUGCGCGaaa--GCUc -5'
6859 3' -47.7 NC_001875.2 + 7091 0.67 0.998651
Target:  5'- uGCgCAGAcAUgcAGCGCGCGCUggcCGAc -3'
miRNA:   3'- gCG-GUUUuUA--UCGUGCGCGAaa-GCUc -5'
6859 3' -47.7 NC_001875.2 + 47320 0.67 0.998651
Target:  5'- -uUCAAAGAUGacGCACGUGCUgUCGGc -3'
miRNA:   3'- gcGGUUUUUAU--CGUGCGCGAaAGCUc -5'
6859 3' -47.7 NC_001875.2 + 66261 0.67 0.998651
Target:  5'- cCGCCAAcugGGAcaagcucuucUGGCACGCGCUcugCGu- -3'
miRNA:   3'- -GCGGUU---UUU----------AUCGUGCGCGAaa-GCuc -5'
6859 3' -47.7 NC_001875.2 + 32867 0.67 0.998651
Target:  5'- gGCCAAAAGUAGCGuucgcugcaGCGCUgcaaaCGGc -3'
miRNA:   3'- gCGGUUUUUAUCGUg--------CGCGAaa---GCUc -5'
6859 3' -47.7 NC_001875.2 + 50543 0.67 0.998361
Target:  5'- gCGCCGccGGcGGCGCGCGUgucuuuugCGGGg -3'
miRNA:   3'- -GCGGUuuUUaUCGUGCGCGaaa-----GCUC- -5'
6859 3' -47.7 NC_001875.2 + 38466 0.67 0.998361
Target:  5'- gCGCUAGAAuUGGUgcaGCGCGUgcUCGAc -3'
miRNA:   3'- -GCGGUUUUuAUCG---UGCGCGaaAGCUc -5'
6859 3' -47.7 NC_001875.2 + 44592 0.67 0.998361
Target:  5'- gCGuCCAAuuuuUGGCccaGCGCGCgcUCGGGg -3'
miRNA:   3'- -GC-GGUUuuu-AUCG---UGCGCGaaAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 48594 0.67 0.998361
Target:  5'- uGCCuuaAAGAGUGGUACaCGCUcUUUGAGu -3'
miRNA:   3'- gCGG---UUUUUAUCGUGcGCGA-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130094 0.67 0.998021
Target:  5'- uCGCCGcuGAggcaccgcUAGCACaCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUuuUU--------AUCGUGcGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 48039 0.67 0.998021
Target:  5'- cCGCCGcccacaggcacGAG--GGCGCGCGCUacaaCGAGu -3'
miRNA:   3'- -GCGGU-----------UUUuaUCGUGCGCGAaa--GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.