miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 3' -52.8 NC_001875.2 + 88939 0.66 0.953922
Target:  5'- -cGGCAUGCgGCUGC-ACAGC-CUCGa -3'
miRNA:   3'- gcUCGUACG-UGGCGaUGUUGuGAGCa -5'
6860 3' -52.8 NC_001875.2 + 35929 0.67 0.951424
Target:  5'- uCGAGCAUGC-CCGCguauuuuugcuucggUGCAcgACAUUCu- -3'
miRNA:   3'- -GCUCGUACGuGGCG---------------AUGU--UGUGAGca -5'
6860 3' -52.8 NC_001875.2 + 81809 0.67 0.949709
Target:  5'- aCGGGCcgGCcgccucGCCGCccgGCGACACgcgCGc -3'
miRNA:   3'- -GCUCGuaCG------UGGCGa--UGUUGUGa--GCa -5'
6860 3' -52.8 NC_001875.2 + 94834 0.67 0.949709
Target:  5'- -cAGCGUGCGCUGCaucauUGCGGCGauaUCGg -3'
miRNA:   3'- gcUCGUACGUGGCG-----AUGUUGUg--AGCa -5'
6860 3' -52.8 NC_001875.2 + 32132 0.67 0.945246
Target:  5'- --uGCGaGCGCCGC-AUAGCGCUCa- -3'
miRNA:   3'- gcuCGUaCGUGGCGaUGUUGUGAGca -5'
6860 3' -52.8 NC_001875.2 + 110152 0.67 0.940531
Target:  5'- --cGCA-GCACCGCguc-GCGCUCGUc -3'
miRNA:   3'- gcuCGUaCGUGGCGauguUGUGAGCA- -5'
6860 3' -52.8 NC_001875.2 + 52711 0.67 0.940531
Target:  5'- aCGAGCccGCcgcggcgcccGCCGCcgACAACGC-CGUg -3'
miRNA:   3'- -GCUCGuaCG----------UGGCGa-UGUUGUGaGCA- -5'
6860 3' -52.8 NC_001875.2 + 31844 0.67 0.935562
Target:  5'- gCGAcCA-GCACCGCgcuaACAGCGCUCc- -3'
miRNA:   3'- -GCUcGUaCGUGGCGa---UGUUGUGAGca -5'
6860 3' -52.8 NC_001875.2 + 57023 0.67 0.935562
Target:  5'- gGAGUGUaacGCGCCGCUG-GGCGCgUCGUa -3'
miRNA:   3'- gCUCGUA---CGUGGCGAUgUUGUG-AGCA- -5'
6860 3' -52.8 NC_001875.2 + 110860 0.67 0.935562
Target:  5'- aCGGGCAguUGCGCUGCgggcauUGCGACGCguuugCGc -3'
miRNA:   3'- -GCUCGU--ACGUGGCG------AUGUUGUGa----GCa -5'
6860 3' -52.8 NC_001875.2 + 122909 0.67 0.935562
Target:  5'- -cGGCcgGcCGCUGCUGCAGCG-UCGUg -3'
miRNA:   3'- gcUCGuaC-GUGGCGAUGUUGUgAGCA- -5'
6860 3' -52.8 NC_001875.2 + 8514 0.67 0.930337
Target:  5'- aGGGCGUGCGCU-CUGCcuGCGCgUCGUu -3'
miRNA:   3'- gCUCGUACGUGGcGAUGu-UGUG-AGCA- -5'
6860 3' -52.8 NC_001875.2 + 68633 0.67 0.930337
Target:  5'- gCGGGCGacguaaagcUGCGCUGCccGCAACACUUc- -3'
miRNA:   3'- -GCUCGU---------ACGUGGCGa-UGUUGUGAGca -5'
6860 3' -52.8 NC_001875.2 + 85671 0.67 0.924855
Target:  5'- uGGGC--GCGCCGgcCUGCAGCgACUCGa -3'
miRNA:   3'- gCUCGuaCGUGGC--GAUGUUG-UGAGCa -5'
6860 3' -52.8 NC_001875.2 + 6948 0.67 0.924855
Target:  5'- uCGuGCGUGCGCCGCgACAuCGCcaCGg -3'
miRNA:   3'- -GCuCGUACGUGGCGaUGUuGUGa-GCa -5'
6860 3' -52.8 NC_001875.2 + 90464 0.67 0.924293
Target:  5'- uGGGCG-GCGCguaauuuCGCUGCAGCGCgCGUu -3'
miRNA:   3'- gCUCGUaCGUG-------GCGAUGUUGUGaGCA- -5'
6860 3' -52.8 NC_001875.2 + 39189 0.67 0.924293
Target:  5'- gCGuGGCguuuacgGUGCGCCGCUACAACcgccACgUCGUc -3'
miRNA:   3'- -GC-UCG-------UACGUGGCGAUGUUG----UG-AGCA- -5'
6860 3' -52.8 NC_001875.2 + 68429 0.68 0.921442
Target:  5'- aGAGCAUGCacaagauuuugcaggACCaGCUGCAaACGCUUa- -3'
miRNA:   3'- gCUCGUACG---------------UGG-CGAUGU-UGUGAGca -5'
6860 3' -52.8 NC_001875.2 + 100179 0.68 0.919116
Target:  5'- gCGAGCGgcaugaaaagcGCGCCGUugUGCGACaacuuGCUCGUg -3'
miRNA:   3'- -GCUCGUa----------CGUGGCG--AUGUUG-----UGAGCA- -5'
6860 3' -52.8 NC_001875.2 + 33228 0.68 0.919116
Target:  5'- gCGGGCucgccggGCGCCGUUucggcGCGGCGCUCc- -3'
miRNA:   3'- -GCUCGua-----CGUGGCGA-----UGUUGUGAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.