miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 5' -60.1 NC_001875.2 + 76896 0.66 0.732176
Target:  5'- aACGCGcGCGCaaaGGgg-CGGCGCccaGCg -3'
miRNA:   3'- -UGUGC-CGCGg--CCaaaGCCGCGug-CGg -5'
6860 5' -60.1 NC_001875.2 + 20036 0.66 0.732176
Target:  5'- aGCAgccaGGCGCCG---UCGGCcgcguGCACcGCCg -3'
miRNA:   3'- -UGUg---CCGCGGCcaaAGCCG-----CGUG-CGG- -5'
6860 5' -60.1 NC_001875.2 + 46017 0.66 0.722564
Target:  5'- uGCACGacGUGCUGaUUUUGauucaacacGCGCGCGCCg -3'
miRNA:   3'- -UGUGC--CGCGGCcAAAGC---------CGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 105528 0.66 0.722564
Target:  5'- gACACGGCucGUCGcGaaaUUGGCGUgACGCCc -3'
miRNA:   3'- -UGUGCCG--CGGC-Caa-AGCCGCG-UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 74634 0.66 0.722564
Target:  5'- uGCACuGCGCUG---UCGGCaGCGUGCCa -3'
miRNA:   3'- -UGUGcCGCGGCcaaAGCCG-CGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 35775 0.66 0.721599
Target:  5'- gGCGCGuuguccauagugcGUGCCGGU----GCGCACGCg -3'
miRNA:   3'- -UGUGC-------------CGCGGCCAaagcCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 100994 0.66 0.721599
Target:  5'- cCGCGGCGUuugcggCGGUUUUG-CGCAacaaccuguuugcCGCCg -3'
miRNA:   3'- uGUGCCGCG------GCCAAAGCcGCGU-------------GCGG- -5'
6860 5' -60.1 NC_001875.2 + 80625 0.66 0.721599
Target:  5'- cGCGCGGaaCGCgcgcucgaCGGg--CGGCGCcagaaccGCGCCg -3'
miRNA:   3'- -UGUGCC--GCG--------GCCaaaGCCGCG-------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 69262 0.66 0.712879
Target:  5'- gGCACGG-GCCGGUUaauGCaCACGCa -3'
miRNA:   3'- -UGUGCCgCGGCCAAagcCGcGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 113774 0.66 0.712879
Target:  5'- aGCACcuGGCuugGCCGGUUgucCGccacGCGCAUGUCg -3'
miRNA:   3'- -UGUG--CCG---CGGCCAAa--GC----CGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 52188 0.66 0.712879
Target:  5'- gGCACGGUcaacuuGCUGGg--CGacUGCGCGCCg -3'
miRNA:   3'- -UGUGCCG------CGGCCaaaGCc-GCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 23172 0.66 0.712879
Target:  5'- gGCACGGCGgcugCGGgcaCGGCcGUugGCg -3'
miRNA:   3'- -UGUGCCGCg---GCCaaaGCCG-CGugCGg -5'
6860 5' -60.1 NC_001875.2 + 81467 0.66 0.712879
Target:  5'- cACGCuGGUcCgCGGUcagUGGCGCGCGCg -3'
miRNA:   3'- -UGUG-CCGcG-GCCAaa-GCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 10659 0.66 0.712879
Target:  5'- cUugGGCGgCGGacugcacUUGGCGCagGCGCUg -3'
miRNA:   3'- uGugCCGCgGCCaa-----AGCCGCG--UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 19851 0.66 0.712879
Target:  5'- aGCGCGcaagacucgGCCGcGUcgCGGCGCggGCGCCg -3'
miRNA:   3'- -UGUGCcg-------CGGC-CAaaGCCGCG--UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 45647 0.66 0.712879
Target:  5'- -gGCGGCGCCucuaGUUUUGcGUacaGCGCGUCa -3'
miRNA:   3'- ugUGCCGCGGc---CAAAGC-CG---CGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 111084 0.66 0.712879
Target:  5'- gACGcCGGCGCCGugaaaaccuuuuGUUgCGGCguGCACGgCa -3'
miRNA:   3'- -UGU-GCCGCGGC------------CAAaGCCG--CGUGCgG- -5'
6860 5' -60.1 NC_001875.2 + 96332 0.66 0.712879
Target:  5'- cGCGCGGcCGCCcGUUgcCGGCaguuguCAUGCCg -3'
miRNA:   3'- -UGUGCC-GCGGcCAAa-GCCGc-----GUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 50953 0.66 0.712879
Target:  5'- cGCGCGacuuGCucuGCCacucUUUGGCGCGCGCCg -3'
miRNA:   3'- -UGUGC----CG---CGGcca-AAGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 90504 0.66 0.712879
Target:  5'- cGCGCGGC-CCacuugcaCGGCGUACGCg -3'
miRNA:   3'- -UGUGCCGcGGccaaa--GCCGCGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.