miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6861 3' -49.8 NC_001875.2 + 72822 0.66 0.995822
Target:  5'- cGCGUuuuaaUGaugUCCGa---GCUGCGCACCg -3'
miRNA:   3'- -UGUA-----ACaa-AGGUagugCGACGCGUGG- -5'
6861 3' -49.8 NC_001875.2 + 4258 0.66 0.995822
Target:  5'- cACAcUUGgcgUCCAUCcuguaaaaguGCaGCaGCGCGCCg -3'
miRNA:   3'- -UGU-AACaa-AGGUAG----------UG-CGaCGCGUGG- -5'
6861 3' -49.8 NC_001875.2 + 9348 0.66 0.995822
Target:  5'- ----aGUUUCCAuauucuugggcaUCGCaaagguGCUGCGCGCg -3'
miRNA:   3'- uguaaCAAAGGU------------AGUG------CGACGCGUGg -5'
6861 3' -49.8 NC_001875.2 + 2374 0.66 0.995822
Target:  5'- cAUGUUGgagUCCGaCA-GCUGCGC-CCa -3'
miRNA:   3'- -UGUAACaa-AGGUaGUgCGACGCGuGG- -5'
6861 3' -49.8 NC_001875.2 + 37827 0.66 0.995103
Target:  5'- gGCggUGgcgaUCaCGUacgaCACGCUGCGCGCg -3'
miRNA:   3'- -UGuaACaa--AG-GUA----GUGCGACGCGUGg -5'
6861 3' -49.8 NC_001875.2 + 76319 0.66 0.995103
Target:  5'- cGCAUUccgagccgCCAUCGagcaggUGCUGCGcCACCa -3'
miRNA:   3'- -UGUAAcaaa----GGUAGU------GCGACGC-GUGG- -5'
6861 3' -49.8 NC_001875.2 + 91126 0.66 0.995103
Target:  5'- gGCGUUGUagUUgAUgACGC-GCGCGCg -3'
miRNA:   3'- -UGUAACAa-AGgUAgUGCGaCGCGUGg -5'
6861 3' -49.8 NC_001875.2 + 9692 0.66 0.995103
Target:  5'- cCGUUGgggcucgCCGUCguGCGCgccgGCcGCGCCg -3'
miRNA:   3'- uGUAACaaa----GGUAG--UGCGa---CG-CGUGG- -5'
6861 3' -49.8 NC_001875.2 + 69363 0.66 0.995103
Target:  5'- aGCGgcGUgcgCC----CGCUGCGCGCCg -3'
miRNA:   3'- -UGUaaCAaa-GGuaguGCGACGCGUGG- -5'
6861 3' -49.8 NC_001875.2 + 126659 0.66 0.994285
Target:  5'- gACGUUGaccgCCAUgcaCGCGCUGacgaGCACg -3'
miRNA:   3'- -UGUAACaaa-GGUA---GUGCGACg---CGUGg -5'
6861 3' -49.8 NC_001875.2 + 108814 0.66 0.994285
Target:  5'- --uUUGgaacugUCCAaCACGCugaacacggUGCGCGCCc -3'
miRNA:   3'- uguAACaa----AGGUaGUGCG---------ACGCGUGG- -5'
6861 3' -49.8 NC_001875.2 + 72950 0.66 0.994285
Target:  5'- uGCAgcGUUUCgG--GCGCcacgGCGCGCCu -3'
miRNA:   3'- -UGUaaCAAAGgUagUGCGa---CGCGUGG- -5'
6861 3' -49.8 NC_001875.2 + 84157 0.66 0.993361
Target:  5'- cGCGUUGagaaa--CGCGCgGCGCGCCg -3'
miRNA:   3'- -UGUAACaaagguaGUGCGaCGCGUGG- -5'
6861 3' -49.8 NC_001875.2 + 86120 0.66 0.993361
Target:  5'- cGCGUggacGUggCCAUCggcaguGCGCgGCGCGCg -3'
miRNA:   3'- -UGUAa---CAaaGGUAG------UGCGaCGCGUGg -5'
6861 3' -49.8 NC_001875.2 + 122538 0.66 0.992322
Target:  5'- -gAUUGcgUCCggCGCGCaGUGCACa -3'
miRNA:   3'- ugUAACaaAGGuaGUGCGaCGCGUGg -5'
6861 3' -49.8 NC_001875.2 + 19276 0.66 0.992322
Target:  5'- uACAUUuacaaGUUUCCGuUCACGCUGCa---- -3'
miRNA:   3'- -UGUAA-----CAAAGGU-AGUGCGACGcgugg -5'
6861 3' -49.8 NC_001875.2 + 94782 0.67 0.991156
Target:  5'- cACAgcgUGgccgcgUCCG-CGCGCgUGCaGCGCCg -3'
miRNA:   3'- -UGUa--ACaa----AGGUaGUGCG-ACG-CGUGG- -5'
6861 3' -49.8 NC_001875.2 + 44451 0.67 0.991156
Target:  5'- aGCAagGcg-CCGUCgGCGCaGUGCGCCa -3'
miRNA:   3'- -UGUaaCaaaGGUAG-UGCGaCGCGUGG- -5'
6861 3' -49.8 NC_001875.2 + 68154 0.67 0.991156
Target:  5'- ---------gCAUCggcgaACGCUGCGCGCCg -3'
miRNA:   3'- uguaacaaagGUAG-----UGCGACGCGUGG- -5'
6861 3' -49.8 NC_001875.2 + 105478 0.67 0.989856
Target:  5'- --------cCCGUCGCGgUGCaGCACCu -3'
miRNA:   3'- uguaacaaaGGUAGUGCgACG-CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.