miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6862 3' -66 NC_001875.2 + 58811 0.66 0.48546
Target:  5'- uGGCCCaGCugcacgCGGaaaUGCgCGCGuuGCGCa -3'
miRNA:   3'- -CCGGG-CG------GCCaa-GCGgGCGCggCGCG- -5'
6862 3' -66 NC_001875.2 + 34970 0.66 0.48546
Target:  5'- gGGCa-GCUGGacCGCCCGCuagaaGUgGCGCc -3'
miRNA:   3'- -CCGggCGGCCaaGCGGGCG-----CGgCGCG- -5'
6862 3' -66 NC_001875.2 + 44455 0.66 0.48546
Target:  5'- aGGCgCCGUCGGcgcagugCGCCaa-GUCGUGCa -3'
miRNA:   3'- -CCG-GGCGGCCaa-----GCGGgcgCGGCGCG- -5'
6862 3' -66 NC_001875.2 + 20906 0.66 0.48546
Target:  5'- aGCCCGUCGcaUUGUUCGUGUgggCGCGCc -3'
miRNA:   3'- cCGGGCGGCcaAGCGGGCGCG---GCGCG- -5'
6862 3' -66 NC_001875.2 + 9870 0.66 0.48546
Target:  5'- uGCCCGCCaGcUUuuugaauaCGCUgcaaCGCuGCCGCGCg -3'
miRNA:   3'- cCGGGCGGcC-AA--------GCGG----GCG-CGGCGCG- -5'
6862 3' -66 NC_001875.2 + 40607 0.66 0.48546
Target:  5'- cGGCgCCG-UGGUgggCGCCaccaCGCGCCuCGCc -3'
miRNA:   3'- -CCG-GGCgGCCAa--GCGG----GCGCGGcGCG- -5'
6862 3' -66 NC_001875.2 + 83394 0.66 0.48546
Target:  5'- aGuaUCGCgGGUuggUCGCCaugGCGCCGCa- -3'
miRNA:   3'- -CcgGGCGgCCA---AGCGGg--CGCGGCGcg -5'
6862 3' -66 NC_001875.2 + 18696 0.66 0.48546
Target:  5'- cGCgCGCCGGcgUGCacauuaaCGUGCCGCa- -3'
miRNA:   3'- cCGgGCGGCCaaGCGg------GCGCGGCGcg -5'
6862 3' -66 NC_001875.2 + 128757 0.66 0.48546
Target:  5'- cGGCgcgugcaCGCCGuGggCGaCCCcggcGCGCCGCuGCg -3'
miRNA:   3'- -CCGg------GCGGC-CaaGC-GGG----CGCGGCG-CG- -5'
6862 3' -66 NC_001875.2 + 63725 0.66 0.48546
Target:  5'- cGGCgaCGgCGGgcgcUUCGCCgGCGUCGCu- -3'
miRNA:   3'- -CCGg-GCgGCC----AAGCGGgCGCGGCGcg -5'
6862 3' -66 NC_001875.2 + 108254 0.66 0.481914
Target:  5'- cGGgCUGCUGGccaagcacgcggUGCCCGCGCuCGUGa -3'
miRNA:   3'- -CCgGGCGGCCaa----------GCGGGCGCG-GCGCg -5'
6862 3' -66 NC_001875.2 + 80123 0.66 0.47662
Target:  5'- aGGCCCaUgGGUcgucgcacUCGUgCGCGUCGCuGCu -3'
miRNA:   3'- -CCGGGcGgCCA--------AGCGgGCGCGGCG-CG- -5'
6862 3' -66 NC_001875.2 + 116619 0.66 0.47662
Target:  5'- uGCUCGuuGGggCGCuuGUaCuCGCGCa -3'
miRNA:   3'- cCGGGCggCCaaGCGggCGcG-GCGCG- -5'
6862 3' -66 NC_001875.2 + 46918 0.66 0.47662
Target:  5'- cGCgCGuuGcUUCGCcagccCCGUGCUGCGCu -3'
miRNA:   3'- cCGgGCggCcAAGCG-----GGCGCGGCGCG- -5'
6862 3' -66 NC_001875.2 + 91747 0.66 0.47662
Target:  5'- cGCCaGCCaGUggcgCGUCaGCGCCGCGg -3'
miRNA:   3'- cCGGgCGGcCAa---GCGGgCGCGGCGCg -5'
6862 3' -66 NC_001875.2 + 41134 0.66 0.47662
Target:  5'- cGCuuGaCCGG--CGgCCGCGCCG-GCa -3'
miRNA:   3'- cCGggC-GGCCaaGCgGGCGCGGCgCG- -5'
6862 3' -66 NC_001875.2 + 36063 0.66 0.47662
Target:  5'- cGGUuuGCgcaaCGGUUCcuGCaacaagaCGCGCuCGCGCg -3'
miRNA:   3'- -CCGggCG----GCCAAG--CGg------GCGCG-GCGCG- -5'
6862 3' -66 NC_001875.2 + 4695 0.66 0.46786
Target:  5'- aGCCCGUCGa--UGCCCGCcGCgggguuccacaCGCGCu -3'
miRNA:   3'- cCGGGCGGCcaaGCGGGCG-CG-----------GCGCG- -5'
6862 3' -66 NC_001875.2 + 113619 0.66 0.46786
Target:  5'- gGGCCgCGgCGGcaagagcggCGaCgGCGCCGCGUa -3'
miRNA:   3'- -CCGG-GCgGCCaa-------GCgGgCGCGGCGCG- -5'
6862 3' -66 NC_001875.2 + 16844 0.66 0.46786
Target:  5'- -cCCCGCCGaUUCGCUacgcggGCGCaCGUGUa -3'
miRNA:   3'- ccGGGCGGCcAAGCGGg-----CGCG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.