miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6862 5' -54.3 NC_001875.2 + 131320 0.66 0.936813
Target:  5'- -aGCUCGagauuuGCAAGAGUccaugGAGCgccaaaaacaGGCGCAc -3'
miRNA:   3'- ggCGAGU------UGUUCUCA-----CUCGa---------CCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 3162 0.66 0.931704
Target:  5'- gUCGggCGGCGAGuaGGUGAGCcGGCGg- -3'
miRNA:   3'- -GGCgaGUUGUUC--UCACUCGaCCGCgu -5'
6862 5' -54.3 NC_001875.2 + 38499 0.66 0.931704
Target:  5'- cCCGa-CGACAAG-GUGGuGCUGGUGUc -3'
miRNA:   3'- -GGCgaGUUGUUCuCACU-CGACCGCGu -5'
6862 5' -54.3 NC_001875.2 + 39652 0.66 0.931704
Target:  5'- aCCGCgc-GCGAGuuUGGGCcggcGGCGCGc -3'
miRNA:   3'- -GGCGaguUGUUCucACUCGa---CCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 115875 0.66 0.920732
Target:  5'- gCCGCUCuggccgGGCAGGAugcgGUcaaaGuGCUGGCGCc -3'
miRNA:   3'- -GGCGAG------UUGUUCU----CA----CuCGACCGCGu -5'
6862 5' -54.3 NC_001875.2 + 104639 0.66 0.920732
Target:  5'- cCCGUgcccCAGCAuaaauGAGUaGAGCgUGGCGUu -3'
miRNA:   3'- -GGCGa---GUUGUu----CUCA-CUCG-ACCGCGu -5'
6862 5' -54.3 NC_001875.2 + 37097 0.66 0.914869
Target:  5'- aCCGC-C-GCGuGGGUGuGCgGGCGCGg -3'
miRNA:   3'- -GGCGaGuUGUuCUCACuCGaCCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 42737 0.66 0.914869
Target:  5'- gUCGCgcgCGGCGAcgcgcauGGUGAGC-GGCGCGc -3'
miRNA:   3'- -GGCGa--GUUGUUc------UCACUCGaCCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 46966 0.66 0.914869
Target:  5'- gCUGCagGGCGAGAcgGUGAGCcgcgaUGaGCGCAc -3'
miRNA:   3'- -GGCGagUUGUUCU--CACUCG-----AC-CGCGU- -5'
6862 5' -54.3 NC_001875.2 + 10489 0.67 0.908755
Target:  5'- uUGCUgAACGAGuucGAgcuGCUGGCGCGg -3'
miRNA:   3'- gGCGAgUUGUUCucaCU---CGACCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 52629 0.67 0.902393
Target:  5'- gUCGCaCAACAAGgugcaGGUGuGC-GGCGCGg -3'
miRNA:   3'- -GGCGaGUUGUUC-----UCACuCGaCCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 61101 0.67 0.895786
Target:  5'- uUGUUCuugaAAGAG-GGGCUGGCGUu -3'
miRNA:   3'- gGCGAGuug-UUCUCaCUCGACCGCGu -5'
6862 5' -54.3 NC_001875.2 + 100108 0.67 0.881848
Target:  5'- aUCGCUaCGcCAAGGcGUGuuacauGCUGGCGCu -3'
miRNA:   3'- -GGCGA-GUuGUUCU-CACu-----CGACCGCGu -5'
6862 5' -54.3 NC_001875.2 + 97747 0.68 0.866976
Target:  5'- gCGCUCGugcaaccccggcACGGGcGUGuggcuGUUGGCGCAa -3'
miRNA:   3'- gGCGAGU------------UGUUCuCACu----CGACCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 89503 0.68 0.866976
Target:  5'- aCCGCUUGGgAAaGGUGcAGUUGGCGUc -3'
miRNA:   3'- -GGCGAGUUgUUcUCAC-UCGACCGCGu -5'
6862 5' -54.3 NC_001875.2 + 47616 0.68 0.858414
Target:  5'- gCCGCUCAAC---AGUGgcguaccuaugaaGGCagGGCGCAa -3'
miRNA:   3'- -GGCGAGUUGuucUCAC-------------UCGa-CCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 62370 0.68 0.856828
Target:  5'- aUCGCUCAACAcgcgcacguuguuuAGcGUG-GCcGGCGCGc -3'
miRNA:   3'- -GGCGAGUUGU--------------UCuCACuCGaCCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 21905 0.68 0.851214
Target:  5'- gCUGCUCcGC---GGUGAGC-GGCGCGu -3'
miRNA:   3'- -GGCGAGuUGuucUCACUCGaCCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 93953 0.68 0.851214
Target:  5'- gCCGCgcCAGCAAGcc---GCUGGCGCGg -3'
miRNA:   3'- -GGCGa-GUUGUUCucacuCGACCGCGU- -5'
6862 5' -54.3 NC_001875.2 + 104960 0.68 0.843016
Target:  5'- uUGCUCGuguGCGGcGGcGGGCUGGUGCAc -3'
miRNA:   3'- gGCGAGU---UGUUcUCaCUCGACCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.