miRNA display CGI


Results 21 - 40 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6863 3' -56 NC_001875.2 + 98039 0.66 0.877107
Target:  5'- cGCCGUGCGCcGAcgggcaaguGCGCCUA---GACc -3'
miRNA:   3'- cCGGCACGCGuUU---------CGCGGAUgcaCUG- -5'
6863 3' -56 NC_001875.2 + 57523 0.66 0.877107
Target:  5'- cGcCCGUGCuGUccGGCGCCUGCGcgccguaGGCg -3'
miRNA:   3'- cC-GGCACG-CGuuUCGCGGAUGCa------CUG- -5'
6863 3' -56 NC_001875.2 + 54693 0.66 0.877107
Target:  5'- uGCCGUcCGCAAAGCauuuguacuGCCUggcgacggGCGUGgACa -3'
miRNA:   3'- cCGGCAcGCGUUUCG---------CGGA--------UGCAC-UG- -5'
6863 3' -56 NC_001875.2 + 7013 0.66 0.875652
Target:  5'- uGGCCGgcgGCGCGuaucugaccuuuAGCGCCgccACGcUGGu -3'
miRNA:   3'- -CCGGCa--CGCGUu-----------UCGCGGa--UGC-ACUg -5'
6863 3' -56 NC_001875.2 + 12972 0.66 0.869744
Target:  5'- cGGgCGUGgGCuccGCGCCgugGUGGCu -3'
miRNA:   3'- -CCgGCACgCGuuuCGCGGaugCACUG- -5'
6863 3' -56 NC_001875.2 + 89791 0.66 0.869744
Target:  5'- uGCaCGUGCGCGAacgcAGCGCggGCGgcaGAUc -3'
miRNA:   3'- cCG-GCACGCGUU----UCGCGgaUGCa--CUG- -5'
6863 3' -56 NC_001875.2 + 41597 0.66 0.869744
Target:  5'- cGCCGaagGCGC-GGGCGCggGCGcgGGCa -3'
miRNA:   3'- cCGGCa--CGCGuUUCGCGgaUGCa-CUG- -5'
6863 3' -56 NC_001875.2 + 37428 0.66 0.868995
Target:  5'- aGGCCGUgGCGCAGucggcggccaaauAGCcGCCgcaAUG-GACa -3'
miRNA:   3'- -CCGGCA-CGCGUU-------------UCG-CGGa--UGCaCUG- -5'
6863 3' -56 NC_001875.2 + 124699 0.66 0.862162
Target:  5'- uGGCCcuucgGC-CAAcGCGCCUggcaagcggcGCGUGGCg -3'
miRNA:   3'- -CCGGca---CGcGUUuCGCGGA----------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 90031 0.66 0.862162
Target:  5'- uGGCCGcgGCGCc-GGCGC--GCGUGcCg -3'
miRNA:   3'- -CCGGCa-CGCGuuUCGCGgaUGCACuG- -5'
6863 3' -56 NC_001875.2 + 121162 0.66 0.854368
Target:  5'- aGCCGU-UGCGGcAGCGCCUGCGc--- -3'
miRNA:   3'- cCGGCAcGCGUU-UCGCGGAUGCacug -5'
6863 3' -56 NC_001875.2 + 32806 0.66 0.854368
Target:  5'- cGCCGgcaaGCucgGCGAacGGCGCCgcuugcgaGCGUGGCa -3'
miRNA:   3'- cCGGCa---CG---CGUU--UCGCGGa-------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 82184 0.66 0.854368
Target:  5'- aGGUCGUGCuCGAugGGCGCCgGCGgccGCu -3'
miRNA:   3'- -CCGGCACGcGUU--UCGCGGaUGCac-UG- -5'
6863 3' -56 NC_001875.2 + 43897 0.66 0.854368
Target:  5'- uGGUCuUGCagagGCGGGGCGUUUGCgGUGGCa -3'
miRNA:   3'- -CCGGcACG----CGUUUCGCGGAUG-CACUG- -5'
6863 3' -56 NC_001875.2 + 98935 0.66 0.854368
Target:  5'- uGCgCGUGCGCGAcGCGC--GCGUGu- -3'
miRNA:   3'- cCG-GCACGCGUUuCGCGgaUGCACug -5'
6863 3' -56 NC_001875.2 + 77477 0.67 0.849592
Target:  5'- aGG-CGUGCGCucgcccaacGCGCCgggcgcguccaacgACGUGACc -3'
miRNA:   3'- -CCgGCACGCGuuu------CGCGGa-------------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 102973 0.67 0.846368
Target:  5'- -aCCGUGUGCuuuGUGcCCUGCG-GGCa -3'
miRNA:   3'- ccGGCACGCGuuuCGC-GGAUGCaCUG- -5'
6863 3' -56 NC_001875.2 + 19350 0.67 0.846368
Target:  5'- cGUgGUGCGCGGAGCGUUggccgACGUa-- -3'
miRNA:   3'- cCGgCACGCGUUUCGCGGa----UGCAcug -5'
6863 3' -56 NC_001875.2 + 37502 0.67 0.838168
Target:  5'- cGGCCGgcgacgGUGCGGAcgacGCGCCcUGCcugGACg -3'
miRNA:   3'- -CCGGCa-----CGCGUUU----CGCGG-AUGca-CUG- -5'
6863 3' -56 NC_001875.2 + 40162 0.67 0.838168
Target:  5'- cGGCCGgcaaCGCGAuGCGCauggGCGUGcCg -3'
miRNA:   3'- -CCGGCac--GCGUUuCGCGga--UGCACuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.