miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6863 5' -54.7 NC_001875.2 + 77828 0.7 0.727487
Target:  5'- cCGGUAcgcGCGCgccgcaaGGCCGUGCGCGAc- -3'
miRNA:   3'- -GCUAU---UGCGacc----CCGGCACGCGUUuc -5'
6863 5' -54.7 NC_001875.2 + 42757 0.7 0.727487
Target:  5'- uGGUGagcggcGCGCUcGGgucGGCCGUGCGCAc-- -3'
miRNA:   3'- gCUAU------UGCGA-CC---CCGGCACGCGUuuc -5'
6863 5' -54.7 NC_001875.2 + 73845 0.7 0.726481
Target:  5'- uCGAgcaAGCGCUGGuGCCGUuggugcgGCGCGAAa -3'
miRNA:   3'- -GCUa--UUGCGACCcCGGCA-------CGCGUUUc -5'
6863 5' -54.7 NC_001875.2 + 100881 0.7 0.715366
Target:  5'- uGAUAACGCguaagccgguccGGGcGCCGcagcGCGCGGAGa -3'
miRNA:   3'- gCUAUUGCGa-----------CCC-CGGCa---CGCGUUUC- -5'
6863 5' -54.7 NC_001875.2 + 79752 0.71 0.707226
Target:  5'- ---cGGCGCUGGuGGCgagcaUGUGCGCAAAc -3'
miRNA:   3'- gcuaUUGCGACC-CCG-----GCACGCGUUUc -5'
6863 5' -54.7 NC_001875.2 + 96969 0.73 0.562073
Target:  5'- aGAcGACGCUGuGGacGUCGUGCGCAAGu -3'
miRNA:   3'- gCUaUUGCGAC-CC--CGGCACGCGUUUc -5'
6863 5' -54.7 NC_001875.2 + 104569 0.74 0.541665
Target:  5'- ---aGugGCUGGGGCgGuUGCGCAAc- -3'
miRNA:   3'- gcuaUugCGACCCCGgC-ACGCGUUuc -5'
6863 5' -54.7 NC_001875.2 + 90669 0.74 0.52151
Target:  5'- aCGcUGGCGCUGGGGC--UGCGCAcAGu -3'
miRNA:   3'- -GCuAUUGCGACCCCGgcACGCGUuUC- -5'
6863 5' -54.7 NC_001875.2 + 36319 0.79 0.276573
Target:  5'- gCGAUcccGCGCUGGGGCUGuUGCGCGu-- -3'
miRNA:   3'- -GCUAu--UGCGACCCCGGC-ACGCGUuuc -5'
6863 5' -54.7 NC_001875.2 + 14166 0.83 0.155143
Target:  5'- aGAc-ACGUgaUGGGGCCGUGCGCAAAGc -3'
miRNA:   3'- gCUauUGCG--ACCCCGGCACGCGUUUC- -5'
6863 5' -54.7 NC_001875.2 + 14214 1.08 0.003653
Target:  5'- gCGAUAACGCUGGGGCCGUGCGCAAAGc -3'
miRNA:   3'- -GCUAUUGCGACCCCGGCACGCGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.