miRNA display CGI


Results 21 - 40 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6864 3' -65.1 NC_001875.2 + 1864 0.66 0.470215
Target:  5'- cCACgaGCAuGC-CGCcGCCGccGCCGCCg -3'
miRNA:   3'- aGUGgaCGU-CGcGCGcCGGC--CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 13530 0.66 0.470215
Target:  5'- aCGCUUGCAGCcguuguugcaaGCGC-GCCaGCUGCa -3'
miRNA:   3'- aGUGGACGUCG-----------CGCGcCGGcCGGCGg -5'
6864 3' -65.1 NC_001875.2 + 85681 0.66 0.470215
Target:  5'- -gGCCUGCAGCGacucgaccagcuUGCGcGCCgcgaucgacuGGuuGCCc -3'
miRNA:   3'- agUGGACGUCGC------------GCGC-CGG----------CCggCGG- -5'
6864 3' -65.1 NC_001875.2 + 23956 0.66 0.470215
Target:  5'- cUCACCgGCucgucgGGCGCGCcuuGuuuaaaauagauCCGGCCGCUg -3'
miRNA:   3'- -AGUGGaCG------UCGCGCGc--C------------GGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 54586 0.66 0.470215
Target:  5'- uUCGCCcgGCGGCGCGCccacGGCgCGGUaucgGUg -3'
miRNA:   3'- -AGUGGa-CGUCGCGCG----CCG-GCCGg---CGg -5'
6864 3' -65.1 NC_001875.2 + 1777 0.66 0.470215
Target:  5'- cCACgaGCAuGC-CGCcGCCGccGCCGCCa -3'
miRNA:   3'- aGUGgaCGU-CGcGCGcCGGC--CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 10997 0.66 0.470215
Target:  5'- -aGCgCUGCAgGCGCGCGuGCCcauGGUgUGCCu -3'
miRNA:   3'- agUG-GACGU-CGCGCGC-CGG---CCG-GCGG- -5'
6864 3' -65.1 NC_001875.2 + 72714 0.66 0.470215
Target:  5'- gCGCCguuaauUGCGcuuGCGCGuCGGCCaGCgaCGCCg -3'
miRNA:   3'- aGUGG------ACGU---CGCGC-GCCGGcCG--GCGG- -5'
6864 3' -65.1 NC_001875.2 + 60853 0.66 0.469324
Target:  5'- gUugCUG-GGCGUuuccaggcucgugGCGGcCCGGCCGUCc -3'
miRNA:   3'- aGugGACgUCGCG-------------CGCC-GGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 54552 0.66 0.468434
Target:  5'- aCugCUGaaacauguacuGCGcCGCGG-CGGCCGCUu -3'
miRNA:   3'- aGugGACgu---------CGC-GCGCCgGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 115749 0.66 0.461348
Target:  5'- aUguCCUaGCGGCGUGCGccaaaCCGG-CGCCg -3'
miRNA:   3'- -AguGGA-CGUCGCGCGCc----GGCCgGCGG- -5'
6864 3' -65.1 NC_001875.2 + 54948 0.66 0.461348
Target:  5'- cCGCCccuuUGC-GCGCGCGuuuGCCGGaCGCg -3'
miRNA:   3'- aGUGG----ACGuCGCGCGC---CGGCCgGCGg -5'
6864 3' -65.1 NC_001875.2 + 18295 0.66 0.461348
Target:  5'- -gGCC-GCuucGCGCGCuuauuGGCCccGCCGCCg -3'
miRNA:   3'- agUGGaCGu--CGCGCG-----CCGGc-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 75597 0.66 0.461348
Target:  5'- ---aCUGCAGC-CGCGcGCCGGCgUGUa -3'
miRNA:   3'- agugGACGUCGcGCGC-CGGCCG-GCGg -5'
6864 3' -65.1 NC_001875.2 + 105895 0.66 0.461348
Target:  5'- gUACCcgaugGCGG-GCGCGG-CGGCCaCCa -3'
miRNA:   3'- aGUGGa----CGUCgCGCGCCgGCCGGcGG- -5'
6864 3' -65.1 NC_001875.2 + 74640 0.66 0.461348
Target:  5'- gCGCUgucgGCAGCGUGCcauGGCCGGg-GCUg -3'
miRNA:   3'- aGUGGa---CGUCGCGCG---CCGGCCggCGG- -5'
6864 3' -65.1 NC_001875.2 + 111979 0.66 0.461348
Target:  5'- gCGCCcGCGccGCGaCGCGGCCGagucuuGCgCGCUg -3'
miRNA:   3'- aGUGGaCGU--CGC-GCGCCGGC------CG-GCGG- -5'
6864 3' -65.1 NC_001875.2 + 67608 0.66 0.461348
Target:  5'- gCACCguuugGaacGUGCGCGGCUGaCUGCCc -3'
miRNA:   3'- aGUGGa----Cgu-CGCGCGCCGGCcGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 125234 0.66 0.460466
Target:  5'- aCACC-GCGuGCgGCGCGGUcauugaggguacgCGGCUGCUc -3'
miRNA:   3'- aGUGGaCGU-CG-CGCGCCG-------------GCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 3084 0.66 0.460466
Target:  5'- gUCGCCcacggcgUGCAcGCGcCGgGGCgCGGCuCGCg -3'
miRNA:   3'- -AGUGG-------ACGU-CGC-GCgCCG-GCCG-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.