miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6864 5' -52 NC_001875.2 + 43527 0.68 0.931369
Target:  5'- gUCGGUGgacgugACGACc-GCGGUGCGGAc- -3'
miRNA:   3'- -AGCCGCa-----UGUUGucCGUCACGCUUuc -5'
6864 5' -52 NC_001875.2 + 113599 0.68 0.941499
Target:  5'- aCGGCGUucgagucgGCGGCGGGCcGcgGCGGcAAGa -3'
miRNA:   3'- aGCCGCA--------UGUUGUCCGuCa-CGCU-UUC- -5'
6864 5' -52 NC_001875.2 + 37084 0.68 0.941499
Target:  5'- uUUGGCGgACGACAccgccgcguGGguGUGCGGGc- -3'
miRNA:   3'- -AGCCGCaUGUUGU---------CCguCACGCUUuc -5'
6864 5' -52 NC_001875.2 + 99681 0.68 0.94618
Target:  5'- cUCGGgGUACAuCAGGCuGU-CGAAc- -3'
miRNA:   3'- -AGCCgCAUGUuGUCCGuCAcGCUUuc -5'
6864 5' -52 NC_001875.2 + 57606 0.67 0.950607
Target:  5'- gUGGUGUAgGGCAGGCAcgGcGCGAu-- -3'
miRNA:   3'- aGCCGCAUgUUGUCCGU--CaCGCUuuc -5'
6864 5' -52 NC_001875.2 + 102000 0.67 0.950607
Target:  5'- gCGGCGUGCGcgGC-GGCGGUG-GAc-- -3'
miRNA:   3'- aGCCGCAUGU--UGuCCGUCACgCUuuc -5'
6864 5' -52 NC_001875.2 + 84123 0.67 0.953557
Target:  5'- cCGGCucaaGCAGCAGGCAGUcgugcacuugccccGCGuuGAGa -3'
miRNA:   3'- aGCCGca--UGUUGUCCGUCA--------------CGCu-UUC- -5'
6864 5' -52 NC_001875.2 + 103003 0.67 0.954784
Target:  5'- gUGGCGUGCGGCAaGuGCGcUGCGGGc- -3'
miRNA:   3'- aGCCGCAUGUUGU-C-CGUcACGCUUuc -5'
6864 5' -52 NC_001875.2 + 129966 0.67 0.958715
Target:  5'- gCGGCGgcgGCGGC-GGCGGcgGCGGc-- -3'
miRNA:   3'- aGCCGCa--UGUUGuCCGUCa-CGCUuuc -5'
6864 5' -52 NC_001875.2 + 92544 0.67 0.962046
Target:  5'- aCGGUGUGCAGCGcgcacuuggugucGGCGG-GCaGAAGc -3'
miRNA:   3'- aGCCGCAUGUUGU-------------CCGUCaCGcUUUC- -5'
6864 5' -52 NC_001875.2 + 42285 0.67 0.965859
Target:  5'- -aGGUGaACGGCAGGCugcgcGUGCGuauAGa -3'
miRNA:   3'- agCCGCaUGUUGUCCGu----CACGCuu-UC- -5'
6864 5' -52 NC_001875.2 + 52916 0.68 0.925916
Target:  5'- gUGGCGUACcugacGCAGGU--UGUGGAGGg -3'
miRNA:   3'- aGCCGCAUGu----UGUCCGucACGCUUUC- -5'
6864 5' -52 NC_001875.2 + 47627 0.69 0.920205
Target:  5'- gUGGCGUACcuaugaAGGCAGgGCGcAAGg -3'
miRNA:   3'- aGCCGCAUGuug---UCCGUCaCGCuUUC- -5'
6864 5' -52 NC_001875.2 + 88238 0.69 0.901526
Target:  5'- uUCGGCGcacgcGCAAcCAGGCAGU-CGAGu- -3'
miRNA:   3'- -AGCCGCa----UGUU-GUCCGUCAcGCUUuc -5'
6864 5' -52 NC_001875.2 + 63260 0.7 0.865417
Target:  5'- cUCGGCGgcCAGCGGcgccacGCGGUGCGcGAc -3'
miRNA:   3'- -AGCCGCauGUUGUC------CGUCACGCuUUc -5'
6864 5' -52 NC_001875.2 + 57747 0.71 0.840981
Target:  5'- aCGGCGUcgcugcccaACuGCAGGUuuUGCGAGGGg -3'
miRNA:   3'- aGCCGCA---------UGuUGUCCGucACGCUUUC- -5'
6864 5' -52 NC_001875.2 + 108939 0.72 0.767433
Target:  5'- aCGGCGUugcGCAGCAGGaugcggccguGUGCGAuAGc -3'
miRNA:   3'- aGCCGCA---UGUUGUCCgu--------CACGCUuUC- -5'
6864 5' -52 NC_001875.2 + 79973 0.76 0.558441
Target:  5'- gUUGGCGUAgAACgAGGCGGUGUuGAGGa -3'
miRNA:   3'- -AGCCGCAUgUUG-UCCGUCACGcUUUC- -5'
6864 5' -52 NC_001875.2 + 46505 0.89 0.117063
Target:  5'- gUCGGCGUucGCGGCGGGCGGgGCGAGAGc -3'
miRNA:   3'- -AGCCGCA--UGUUGUCCGUCaCGCUUUC- -5'
6864 5' -52 NC_001875.2 + 79677 0.66 0.97487
Target:  5'- gUCGcCGUACAGCAGGCAcu-CGAGGu -3'
miRNA:   3'- -AGCcGCAUGUUGUCCGUcacGCUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.