miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6864 5' -52 NC_001875.2 + 8305 0.67 0.962405
Target:  5'- aCGGCcaGCAGCGGGUugGGUGCa---- -3'
miRNA:   3'- aGCCGcaUGUUGUCCG--UCACGcuuuc -5'
6864 5' -52 NC_001875.2 + 8814 0.69 0.920205
Target:  5'- aUCGG-GUugGGCAGGCGGcGCGc--- -3'
miRNA:   3'- -AGCCgCAugUUGUCCGUCaCGCuuuc -5'
6864 5' -52 NC_001875.2 + 11988 0.69 0.908008
Target:  5'- aCGGCGUugGgcGCGGGUguGGUGgCGAGc- -3'
miRNA:   3'- aGCCGCAugU--UGUCCG--UCAC-GCUUuc -5'
6864 5' -52 NC_001875.2 + 12464 0.66 0.969083
Target:  5'- uUCaGCG-GCAGCAGaCGGUGCuGAAAGu -3'
miRNA:   3'- -AGcCGCaUGUUGUCcGUCACG-CUUUC- -5'
6864 5' -52 NC_001875.2 + 13555 1.09 0.005446
Target:  5'- gUCGGCGUACAACAGGCAGUGCGAAAGu -3'
miRNA:   3'- -AGCCGCAUGUUGUCCGUCACGCUUUC- -5'
6864 5' -52 NC_001875.2 + 37084 0.68 0.941499
Target:  5'- uUUGGCGgACGACAccgccgcguGGguGUGCGGGc- -3'
miRNA:   3'- -AGCCGCaUGUUGU---------CCguCACGCUUuc -5'
6864 5' -52 NC_001875.2 + 38285 0.67 0.965859
Target:  5'- gCGcGCGUACGACGacGCGGUGgCGAGc- -3'
miRNA:   3'- aGC-CGCAUGUUGUc-CGUCAC-GCUUuc -5'
6864 5' -52 NC_001875.2 + 42285 0.67 0.965859
Target:  5'- -aGGUGaACGGCAGGCugcgcGUGCGuauAGa -3'
miRNA:   3'- agCCGCaUGUUGUCCGu----CACGCuu-UC- -5'
6864 5' -52 NC_001875.2 + 43527 0.68 0.931369
Target:  5'- gUCGGUGgacgugACGACc-GCGGUGCGGAc- -3'
miRNA:   3'- -AGCCGCa-----UGUUGucCGUCACGCUUuc -5'
6864 5' -52 NC_001875.2 + 45215 0.7 0.85749
Target:  5'- cUGGCGUACAcgucgcgcgcgaACAGGCGGcGCGu--- -3'
miRNA:   3'- aGCCGCAUGU------------UGUCCGUCaCGCuuuc -5'
6864 5' -52 NC_001875.2 + 46505 0.89 0.117063
Target:  5'- gUCGGCGUucGCGGCGGGCGGgGCGAGAGc -3'
miRNA:   3'- -AGCCGCA--UGUUGUCCGUCaCGCUUUC- -5'
6864 5' -52 NC_001875.2 + 47627 0.69 0.920205
Target:  5'- gUGGCGUACcuaugaAGGCAGgGCGcAAGg -3'
miRNA:   3'- aGCCGCAUGuug---UCCGUCaCGCuUUC- -5'
6864 5' -52 NC_001875.2 + 52916 0.68 0.925916
Target:  5'- gUGGCGUACcugacGCAGGU--UGUGGAGGg -3'
miRNA:   3'- aGCCGCAUGu----UGUCCGucACGCUUUC- -5'
6864 5' -52 NC_001875.2 + 54727 0.66 0.969083
Target:  5'- -gGGCGUG-GACAGGUAgccGUGCGGGc- -3'
miRNA:   3'- agCCGCAUgUUGUCCGU---CACGCUUuc -5'
6864 5' -52 NC_001875.2 + 57606 0.67 0.950607
Target:  5'- gUGGUGUAgGGCAGGCAcgGcGCGAu-- -3'
miRNA:   3'- aGCCGCAUgUUGUCCGU--CaCGCUuuc -5'
6864 5' -52 NC_001875.2 + 57747 0.71 0.840981
Target:  5'- aCGGCGUcgcugcccaACuGCAGGUuuUGCGAGGGg -3'
miRNA:   3'- aGCCGCA---------UGuUGUCCGucACGCUUUC- -5'
6864 5' -52 NC_001875.2 + 63260 0.7 0.865417
Target:  5'- cUCGGCGgcCAGCGGcgccacGCGGUGCGcGAc -3'
miRNA:   3'- -AGCCGCauGUUGUC------CGUCACGCuUUc -5'
6864 5' -52 NC_001875.2 + 63444 0.66 0.972085
Target:  5'- uUCGGCGU-CGGCGGcCAGccGCGAGGc -3'
miRNA:   3'- -AGCCGCAuGUUGUCcGUCa-CGCUUUc -5'
6864 5' -52 NC_001875.2 + 65435 0.7 0.880583
Target:  5'- cCGGCGUGCAccGCuGGCGGU-CGguGGc -3'
miRNA:   3'- aGCCGCAUGU--UGuCCGUCAcGCuuUC- -5'
6864 5' -52 NC_001875.2 + 65758 0.72 0.767433
Target:  5'- cUCGGCGUauucgugcGCGGCGGGCGGcgGCGc--- -3'
miRNA:   3'- -AGCCGCA--------UGUUGUCCGUCa-CGCuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.