miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6865 3' -57 NC_001875.2 + 4594 0.66 0.853311
Target:  5'- aCAUGCGCACGaaGaGGCCgcgcucaaacacGGUgUACGg -3'
miRNA:   3'- -GUACGCGUGCggC-CUGG------------UCAgAUGCa -5'
6865 3' -57 NC_001875.2 + 113216 0.66 0.853311
Target:  5'- gCAUGCGUuugaGCGCCGGaAUCAG-CgcCGUg -3'
miRNA:   3'- -GUACGCG----UGCGGCC-UGGUCaGauGCA- -5'
6865 3' -57 NC_001875.2 + 83326 0.66 0.845347
Target:  5'- --gGCGCGCGCCGGGCggcgcgccaaaaUAGUCcauuaACGc -3'
miRNA:   3'- guaCGCGUGCGGCCUG------------GUCAGa----UGCa -5'
6865 3' -57 NC_001875.2 + 63138 0.66 0.845347
Target:  5'- --gGCGCGCgGCCGGcgcACgGGUCcACGg -3'
miRNA:   3'- guaCGCGUG-CGGCC---UGgUCAGaUGCa -5'
6865 3' -57 NC_001875.2 + 39329 0.66 0.837188
Target:  5'- gCGUGCGCGCGCUGcaGGCgCAGcCUgACGc -3'
miRNA:   3'- -GUACGCGUGCGGC--CUG-GUCaGA-UGCa -5'
6865 3' -57 NC_001875.2 + 12290 0.66 0.837188
Target:  5'- cCGUGUGCA-GCCGGcacGCCGccGUgUGCGUg -3'
miRNA:   3'- -GUACGCGUgCGGCC---UGGU--CAgAUGCA- -5'
6865 3' -57 NC_001875.2 + 5018 0.66 0.82884
Target:  5'- cCcgGCGCGCGCUuugucaGAuUCAGUCUGCGc -3'
miRNA:   3'- -GuaCGCGUGCGGc-----CU-GGUCAGAUGCa -5'
6865 3' -57 NC_001875.2 + 37116 0.66 0.820313
Target:  5'- --gGCGCgGCGCCGcGCCGgcGUUUGCGUc -3'
miRNA:   3'- guaCGCG-UGCGGCcUGGU--CAGAUGCA- -5'
6865 3' -57 NC_001875.2 + 5548 0.66 0.820313
Target:  5'- --gGCGCGCGUuaaGGuGCCAGUC-ACGg -3'
miRNA:   3'- guaCGCGUGCGg--CC-UGGUCAGaUGCa -5'
6865 3' -57 NC_001875.2 + 76945 0.67 0.811613
Target:  5'- gUAUGUGCAacUGgCGGACgAGUCcGCGUu -3'
miRNA:   3'- -GUACGCGU--GCgGCCUGgUCAGaUGCA- -5'
6865 3' -57 NC_001875.2 + 45708 0.67 0.811613
Target:  5'- --cGCGCGCGCCGcgcacugccgauGGCCAcGUCcACGc -3'
miRNA:   3'- guaCGCGUGCGGC------------CUGGU-CAGaUGCa -5'
6865 3' -57 NC_001875.2 + 94001 0.67 0.811613
Target:  5'- gGUGCGCGCGCa--GCguGUCgUACGUg -3'
miRNA:   3'- gUACGCGUGCGgccUGguCAG-AUGCA- -5'
6865 3' -57 NC_001875.2 + 48312 0.67 0.811613
Target:  5'- -cUGCGCgACGCCuuuuacaaGGGCCAuGUUUugGUu -3'
miRNA:   3'- guACGCG-UGCGG--------CCUGGU-CAGAugCA- -5'
6865 3' -57 NC_001875.2 + 72258 0.67 0.811613
Target:  5'- --cGCGCACGUCGG-CCAcgCUGCa- -3'
miRNA:   3'- guaCGCGUGCGGCCuGGUcaGAUGca -5'
6865 3' -57 NC_001875.2 + 77479 0.67 0.811613
Target:  5'- gCGUGCGCucgcccaacGCGCCGGGCgC-GUCcaacgACGUg -3'
miRNA:   3'- -GUACGCG---------UGCGGCCUG-GuCAGa----UGCA- -5'
6865 3' -57 NC_001875.2 + 88974 0.67 0.802749
Target:  5'- -uUGCGCugG-CGGACCugcGcCUGCGg -3'
miRNA:   3'- guACGCGugCgGCCUGGu--CaGAUGCa -5'
6865 3' -57 NC_001875.2 + 13914 0.67 0.802749
Target:  5'- --cGCGCACGCCGGccugcagcuuGCC-GUCUGu-- -3'
miRNA:   3'- guaCGCGUGCGGCC----------UGGuCAGAUgca -5'
6865 3' -57 NC_001875.2 + 37581 0.67 0.784563
Target:  5'- gAUGCGCcggcgcgaGCGCCGcGGCCGGcCgcacgGCGg -3'
miRNA:   3'- gUACGCG--------UGCGGC-CUGGUCaGa----UGCa -5'
6865 3' -57 NC_001875.2 + 17835 0.67 0.775258
Target:  5'- cCAUGCGCgaggGCGCCgaaaacgaGGugCAGUCggccgaguuUACGUa -3'
miRNA:   3'- -GUACGCG----UGCGG--------CCugGUCAG---------AUGCA- -5'
6865 3' -57 NC_001875.2 + 2516 0.67 0.769613
Target:  5'- --cGCGUaguugucgauuuaauACGCCGGGCCGGUgaACa- -3'
miRNA:   3'- guaCGCG---------------UGCGGCCUGGUCAgaUGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.