miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6865 5' -59.2 NC_001875.2 + 32810 0.66 0.737555
Target:  5'- ---gGCAAGCUCGGCgaacGGCGCCGcuuGCg- -3'
miRNA:   3'- cuugUGUUUGGGCCG----CCGCGGC---CGau -5'
6865 5' -59.2 NC_001875.2 + 5778 0.66 0.737555
Target:  5'- cAGCGCGu-CCUGGUacGGCauuuGCCGGCUGc -3'
miRNA:   3'- cUUGUGUuuGGGCCG--CCG----CGGCCGAU- -5'
6865 5' -59.2 NC_001875.2 + 39027 0.66 0.737555
Target:  5'- -uGCGCGcACCuCGGCaucGGCGgCGGCg- -3'
miRNA:   3'- cuUGUGUuUGG-GCCG---CCGCgGCCGau -5'
6865 5' -59.2 NC_001875.2 + 59606 0.66 0.737555
Target:  5'- cGAGCACGGGCgcuuuggcggaUUGGCGGaCGCCGcgucGCUGg -3'
miRNA:   3'- -CUUGUGUUUG-----------GGCCGCC-GCGGC----CGAU- -5'
6865 5' -59.2 NC_001875.2 + 17917 0.66 0.737555
Target:  5'- aAACGCAAugCaaGGCGuuUGCCGGCUAu -3'
miRNA:   3'- cUUGUGUUugGg-CCGCc-GCGGCCGAU- -5'
6865 5' -59.2 NC_001875.2 + 43029 0.66 0.737555
Target:  5'- --cCGCGcGCCgCGGC-GCGCgGGCUAu -3'
miRNA:   3'- cuuGUGUuUGG-GCCGcCGCGgCCGAU- -5'
6865 5' -59.2 NC_001875.2 + 67919 0.66 0.737555
Target:  5'- gGAACGgGuucggguucauGAUgCGGCGGCGCCacGGCg- -3'
miRNA:   3'- -CUUGUgU-----------UUGgGCCGCCGCGG--CCGau -5'
6865 5' -59.2 NC_001875.2 + 123340 0.66 0.737555
Target:  5'- -uGCGCGGcGCCCacacGGaCGGCGCcCGGCg- -3'
miRNA:   3'- cuUGUGUU-UGGG----CC-GCCGCG-GCCGau -5'
6865 5' -59.2 NC_001875.2 + 96831 0.66 0.737555
Target:  5'- cGAACAgccgauCGAACUCGGCGaGCGUCaugGGCg- -3'
miRNA:   3'- -CUUGU------GUUUGGGCCGC-CGCGG---CCGau -5'
6865 5' -59.2 NC_001875.2 + 100153 0.66 0.737555
Target:  5'- -cGCGCAAGC--GGCGGUccacGCCGGCa- -3'
miRNA:   3'- cuUGUGUUUGggCCGCCG----CGGCCGau -5'
6865 5' -59.2 NC_001875.2 + 57677 0.66 0.737555
Target:  5'- aAACGCGuccAAgCUGGCGGCGgCgGGCg- -3'
miRNA:   3'- cUUGUGU---UUgGGCCGCCGC-GgCCGau -5'
6865 5' -59.2 NC_001875.2 + 98602 0.66 0.734622
Target:  5'- gGAGCGCcGcgccgaaacggcGCCCGGCGaGCccgcgcccgcguuuGCCGGCa- -3'
miRNA:   3'- -CUUGUGuU------------UGGGCCGC-CG--------------CGGCCGau -5'
6865 5' -59.2 NC_001875.2 + 13977 0.66 0.73168
Target:  5'- cAACGCugcucaaccuguuuGACCUGGUGGUGgCGGUUGa -3'
miRNA:   3'- cUUGUGu-------------UUGGGCCGCCGCgGCCGAU- -5'
6865 5' -59.2 NC_001875.2 + 31236 0.66 0.727747
Target:  5'- aAACAgcGGCCgCGGcCGGCGCCcGGCc- -3'
miRNA:   3'- cUUGUguUUGG-GCC-GCCGCGG-CCGau -5'
6865 5' -59.2 NC_001875.2 + 130099 0.66 0.727747
Target:  5'- cGACGgAAAUggCGGCGGCGgCGGCg- -3'
miRNA:   3'- cUUGUgUUUGg-GCCGCCGCgGCCGau -5'
6865 5' -59.2 NC_001875.2 + 121210 0.66 0.727747
Target:  5'- -uGCAC--GCUgGGCGGCaccgGCCGGUUGu -3'
miRNA:   3'- cuUGUGuuUGGgCCGCCG----CGGCCGAU- -5'
6865 5' -59.2 NC_001875.2 + 130051 0.66 0.727747
Target:  5'- cGACGgAAAUggCGGCGGCGgCGGCg- -3'
miRNA:   3'- cUUGUgUUUGg-GCCGCCGCgGCCGau -5'
6865 5' -59.2 NC_001875.2 + 66228 0.66 0.726761
Target:  5'- uGAACACAAACCgGGUGagcguuucgcacuGCGCCGcCa- -3'
miRNA:   3'- -CUUGUGUUUGGgCCGC-------------CGCGGCcGau -5'
6865 5' -59.2 NC_001875.2 + 63248 0.66 0.717855
Target:  5'- aAACGCGucgGGCUCGGCGGCcagCGGCg- -3'
miRNA:   3'- cUUGUGU---UUGGGCCGCCGcg-GCCGau -5'
6865 5' -59.2 NC_001875.2 + 28525 0.66 0.717855
Target:  5'- -cACGCGucGCCCGGCa-CGCCGGUc- -3'
miRNA:   3'- cuUGUGUu-UGGGCCGccGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.