miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6866 5' -58.8 NC_001875.2 + 55161 0.66 0.723999
Target:  5'- uGUGCuUGaGCCaacugaugcgcaUGGUUUGCGCGUCGAa -3'
miRNA:   3'- -UACG-ACaCGGg-----------GCUAGACGCGCAGCU- -5'
6866 5' -58.8 NC_001875.2 + 128721 0.66 0.716063
Target:  5'- -gGCUucgccGCCCaGGUCUGCGCG-CGAg -3'
miRNA:   3'- uaCGAca---CGGGgCUAGACGCGCaGCU- -5'
6866 5' -58.8 NC_001875.2 + 105996 0.67 0.655401
Target:  5'- gAUGCgccaugGCCCCGAcuucaUCUGgGCGUUGc -3'
miRNA:   3'- -UACGaca---CGGGGCU-----AGACgCGCAGCu -5'
6866 5' -58.8 NC_001875.2 + 54106 0.68 0.6247
Target:  5'- cUGCUGcGCCgCCGAaUUGCGCGUg-- -3'
miRNA:   3'- uACGACaCGG-GGCUaGACGCGCAgcu -5'
6866 5' -58.8 NC_001875.2 + 114319 0.68 0.6247
Target:  5'- uGUGCaUGUGCCCCGcguaacggCU-CGCGUUGGu -3'
miRNA:   3'- -UACG-ACACGGGGCua------GAcGCGCAGCU- -5'
6866 5' -58.8 NC_001875.2 + 16613 0.68 0.604247
Target:  5'- uUGCUGUGgUCCacUCUG-GCGUCGAc -3'
miRNA:   3'- uACGACACgGGGcuAGACgCGCAGCU- -5'
6866 5' -58.8 NC_001875.2 + 99595 0.69 0.5536
Target:  5'- -gGUUGUcGCgCCGGuaugUCUGCGCGUUGGc -3'
miRNA:   3'- uaCGACA-CGgGGCU----AGACGCGCAGCU- -5'
6866 5' -58.8 NC_001875.2 + 111036 0.69 0.533674
Target:  5'- -cGCUGcgacgacGCCCgCGcaCUGCGCGUCGAc -3'
miRNA:   3'- uaCGACa------CGGG-GCuaGACGCGCAGCU- -5'
6866 5' -58.8 NC_001875.2 + 38571 0.7 0.493686
Target:  5'- -cGCggcGUGCCCauccugcucuacaCGGgccagCUGCGCGUCGAg -3'
miRNA:   3'- uaCGa--CACGGG-------------GCUa----GACGCGCAGCU- -5'
6866 5' -58.8 NC_001875.2 + 95554 0.71 0.447792
Target:  5'- -cGCUGaGCCCgGAgcCUGCGCGUCc- -3'
miRNA:   3'- uaCGACaCGGGgCUa-GACGCGCAGcu -5'
6866 5' -58.8 NC_001875.2 + 125037 0.72 0.403504
Target:  5'- -aGCUGguucaGCgaCCCGAUCUGCGgGUCGc -3'
miRNA:   3'- uaCGACa----CG--GGGCUAGACGCgCAGCu -5'
6866 5' -58.8 NC_001875.2 + 103435 0.75 0.281792
Target:  5'- aAUGCUGUGUUugCUGGUCUGCgGCGUCGu -3'
miRNA:   3'- -UACGACACGG--GGCUAGACG-CGCAGCu -5'
6866 5' -58.8 NC_001875.2 + 9937 1.06 0.00192
Target:  5'- uAUGCUGUGCCCCGAUCUGCGCGUCGAc -3'
miRNA:   3'- -UACGACACGGGGCUAGACGCGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.