miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6867 3' -56.7 NC_001875.2 + 47271 0.66 0.884258
Target:  5'- gGUCACGAccgaGGACGCgcucgaCGUGGAgCUCa -3'
miRNA:   3'- -CGGUGCUugagCCUGCG------GCACCU-GAG- -5'
6867 3' -56.7 NC_001875.2 + 16054 0.66 0.884258
Target:  5'- cGCUACaacACUCGu-CGCUGUGGACg- -3'
miRNA:   3'- -CGGUGcu-UGAGCcuGCGGCACCUGag -5'
6867 3' -56.7 NC_001875.2 + 23813 0.66 0.870006
Target:  5'- uCCGCGGcgUCGGgcGCGCCGUGu-CUCu -3'
miRNA:   3'- cGGUGCUugAGCC--UGCGGCACcuGAG- -5'
6867 3' -56.7 NC_001875.2 + 125586 0.66 0.860287
Target:  5'- uGCCACGGcCUCGuuugcgucacagucGACGCgGUGGuACa- -3'
miRNA:   3'- -CGGUGCUuGAGC--------------CUGCGgCACC-UGag -5'
6867 3' -56.7 NC_001875.2 + 36422 0.66 0.85491
Target:  5'- cGCCGCGAGgccuuaccUUUGcGACGCCGgcgcgcUGcGGCUCg -3'
miRNA:   3'- -CGGUGCUU--------GAGC-CUGCGGC------AC-CUGAG- -5'
6867 3' -56.7 NC_001875.2 + 91860 0.67 0.847059
Target:  5'- gGCCACGGGCccccaGGGCGCCugcugGUGcGGCg- -3'
miRNA:   3'- -CGGUGCUUGag---CCUGCGG-----CAC-CUGag -5'
6867 3' -56.7 NC_001875.2 + 24270 0.67 0.839016
Target:  5'- aGCUACGAAUgcugcagCGGAgcaugcucCGCCGcguuUGGAUUCu -3'
miRNA:   3'- -CGGUGCUUGa------GCCU--------GCGGC----ACCUGAG- -5'
6867 3' -56.7 NC_001875.2 + 21565 0.67 0.838201
Target:  5'- gGCCGCGcgauauuAGCgUGGACGCguaCGUGGAC-Ca -3'
miRNA:   3'- -CGGUGC-------UUGaGCCUGCG---GCACCUGaG- -5'
6867 3' -56.7 NC_001875.2 + 19865 0.67 0.830786
Target:  5'- gGCCGCGucGCggcgCGGGCGCCGUuuGCg- -3'
miRNA:   3'- -CGGUGCu-UGa---GCCUGCGGCAccUGag -5'
6867 3' -56.7 NC_001875.2 + 40588 0.67 0.822378
Target:  5'- aGCUGuCGGACUCGuacuacGGCGCCGUGGuggGCg- -3'
miRNA:   3'- -CGGU-GCUUGAGC------CUGCGGCACC---UGag -5'
6867 3' -56.7 NC_001875.2 + 17639 0.67 0.822378
Target:  5'- -aCACGGACUgGGcuGgGuuGUGGACUUu -3'
miRNA:   3'- cgGUGCUUGAgCC--UgCggCACCUGAG- -5'
6867 3' -56.7 NC_001875.2 + 86247 0.67 0.813798
Target:  5'- uGCgCGcCGGAgUCGGGC-CCGcUGGACUUg -3'
miRNA:   3'- -CG-GU-GCUUgAGCCUGcGGC-ACCUGAG- -5'
6867 3' -56.7 NC_001875.2 + 56715 0.67 0.813798
Target:  5'- gGCCGCGcgaAACguacgCGG-UGCCGUgGGACUg -3'
miRNA:   3'- -CGGUGC---UUGa----GCCuGCGGCA-CCUGAg -5'
6867 3' -56.7 NC_001875.2 + 85160 0.67 0.813798
Target:  5'- aCCuuGAACUCGcucGACGUgGUGGugUUg -3'
miRNA:   3'- cGGugCUUGAGC---CUGCGgCACCugAG- -5'
6867 3' -56.7 NC_001875.2 + 83041 0.67 0.813798
Target:  5'- cGCCACGugaUCGcGGCuGCCGUaGGAC-Ca -3'
miRNA:   3'- -CGGUGCuugAGC-CUG-CGGCA-CCUGaG- -5'
6867 3' -56.7 NC_001875.2 + 122076 0.67 0.805055
Target:  5'- uGCCGCGugcgcuuggcCUCGGAacgGCgGUGGACg- -3'
miRNA:   3'- -CGGUGCuu--------GAGCCUg--CGgCACCUGag -5'
6867 3' -56.7 NC_001875.2 + 94029 0.67 0.805055
Target:  5'- cGCCACcgcCUUGG-CGUCGUcaaaGGACUCg -3'
miRNA:   3'- -CGGUGcuuGAGCCuGCGGCA----CCUGAG- -5'
6867 3' -56.7 NC_001875.2 + 12967 0.67 0.804172
Target:  5'- cGCgGCGGGCgUGGgcuccGCGCCGUGGuggcuauugaugcACUCg -3'
miRNA:   3'- -CGgUGCUUGaGCC-----UGCGGCACC-------------UGAG- -5'
6867 3' -56.7 NC_001875.2 + 115508 0.68 0.796157
Target:  5'- -aCGCGAAaccugUgGGACGCCGUguuGGugUCg -3'
miRNA:   3'- cgGUGCUUg----AgCCUGCGGCA---CCugAG- -5'
6867 3' -56.7 NC_001875.2 + 33224 0.68 0.768618
Target:  5'- gGgCGCGGGCUcgcCGGGCGCCGUuucggcgcGGcGCUCc -3'
miRNA:   3'- -CgGUGCUUGA---GCCUGCGGCA--------CC-UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.