miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6867 5' -56.9 NC_001875.2 + 34900 0.66 0.849111
Target:  5'- cCGGUGaaauuguggCCGCcGCGguCGCCAACa-- -3'
miRNA:   3'- -GCCACa--------GGUGcCGCguGCGGUUGaaa -5'
6867 5' -56.9 NC_001875.2 + 90984 0.66 0.849111
Target:  5'- uGGcGcCCGCGGUGCGCGUCuuGGCg-- -3'
miRNA:   3'- gCCaCaGGUGCCGCGUGCGG--UUGaaa -5'
6867 5' -56.9 NC_001875.2 + 39666 0.66 0.849111
Target:  5'- uGG-GcCgGCGGCGCGCGgCGGCg-- -3'
miRNA:   3'- gCCaCaGgUGCCGCGUGCgGUUGaaa -5'
6867 5' -56.9 NC_001875.2 + 125146 0.66 0.849111
Target:  5'- uGGUGUacaaAUGGCGUGCGCCGu---- -3'
miRNA:   3'- gCCACAgg--UGCCGCGUGCGGUugaaa -5'
6867 5' -56.9 NC_001875.2 + 91400 0.66 0.84099
Target:  5'- gGGcUGcCCACguucucgauGGCGCGCGUCAGCc-- -3'
miRNA:   3'- gCC-ACaGGUG---------CCGCGUGCGGUUGaaa -5'
6867 5' -56.9 NC_001875.2 + 69359 0.66 0.84099
Target:  5'- ---aGUCaGCGGCGUGCGCCcGCUg- -3'
miRNA:   3'- gccaCAGgUGCCGCGUGCGGuUGAaa -5'
6867 5' -56.9 NC_001875.2 + 38944 0.66 0.832676
Target:  5'- ---gGUCCAUuGCGCGCGCCugauGCUg- -3'
miRNA:   3'- gccaCAGGUGcCGCGUGCGGu---UGAaa -5'
6867 5' -56.9 NC_001875.2 + 96847 0.66 0.832676
Target:  5'- --uUGUUUgACGGCGCGCGCaCAAUUUUg -3'
miRNA:   3'- gccACAGG-UGCCGCGUGCG-GUUGAAA- -5'
6867 5' -56.9 NC_001875.2 + 113389 0.66 0.832676
Target:  5'- aGGUGUgCCGCGGCGUugcguaguCGCgAAUg-- -3'
miRNA:   3'- gCCACA-GGUGCCGCGu-------GCGgUUGaaa -5'
6867 5' -56.9 NC_001875.2 + 52022 0.66 0.832676
Target:  5'- aGGUGUCgGacGUGCGCGUCAACg-- -3'
miRNA:   3'- gCCACAGgUgcCGCGUGCGGUUGaaa -5'
6867 5' -56.9 NC_001875.2 + 129552 0.66 0.832676
Target:  5'- gCGG---CCACGGCGCGCGCgCAucACg-- -3'
miRNA:   3'- -GCCacaGGUGCCGCGUGCG-GU--UGaaa -5'
6867 5' -56.9 NC_001875.2 + 86136 0.66 0.832676
Target:  5'- uCGGcaGUgCGCGGCGCGCG-CGGCg-- -3'
miRNA:   3'- -GCCa-CAgGUGCCGCGUGCgGUUGaaa -5'
6867 5' -56.9 NC_001875.2 + 4519 0.66 0.824175
Target:  5'- gCGGaaa--GCGGCGCAcCGCCGGCUg- -3'
miRNA:   3'- -GCCacaggUGCCGCGU-GCGGUUGAaa -5'
6867 5' -56.9 NC_001875.2 + 99791 0.66 0.824175
Target:  5'- gCGGUa--CGCGcGCGCACGCuCAugUUUa -3'
miRNA:   3'- -GCCAcagGUGC-CGCGUGCG-GUugAAA- -5'
6867 5' -56.9 NC_001875.2 + 42923 0.66 0.824175
Target:  5'- uGGUGUCguauuGCaGCGCGCcaaagGCCAGCUUg -3'
miRNA:   3'- gCCACAGg----UGcCGCGUG-----CGGUUGAAa -5'
6867 5' -56.9 NC_001875.2 + 118462 0.66 0.824175
Target:  5'- uGGUG-CCgugcguagaaACGGUGCGCaCCAGCUUc -3'
miRNA:   3'- gCCACaGG----------UGCCGCGUGcGGUUGAAa -5'
6867 5' -56.9 NC_001875.2 + 122731 0.66 0.824175
Target:  5'- aCGGcGUCCgaguucgugGCGGgGUuaGCGCCGACUc- -3'
miRNA:   3'- -GCCaCAGG---------UGCCgCG--UGCGGUUGAaa -5'
6867 5' -56.9 NC_001875.2 + 9795 0.66 0.824175
Target:  5'- gGGUGUacuugCACGGCGCcauCGgCGGCUg- -3'
miRNA:   3'- gCCACAg----GUGCCGCGu--GCgGUUGAaa -5'
6867 5' -56.9 NC_001875.2 + 79807 0.66 0.815496
Target:  5'- uCGGUGU-CGCGGUcguugacgcGCACGuCCGACa-- -3'
miRNA:   3'- -GCCACAgGUGCCG---------CGUGC-GGUUGaaa -5'
6867 5' -56.9 NC_001875.2 + 72959 0.66 0.815496
Target:  5'- uCGGgcgCCACGGCGCGC-CUGAUUa- -3'
miRNA:   3'- -GCCacaGGUGCCGCGUGcGGUUGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.