miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6868 3' -63.7 NC_001875.2 + 92177 0.66 0.539534
Target:  5'- --cGCcGCCgCgCGCCGCCGGCCCaaACu -3'
miRNA:   3'- uuuCGcUGG-G-GCGGCGGCUGGGgcUG- -5'
6868 3' -63.7 NC_001875.2 + 44693 0.66 0.539534
Target:  5'- --cGUGACCUCGCUGCCcacgcgguacuuGAgCaCCGGCa -3'
miRNA:   3'- uuuCGCUGGGGCGGCGG------------CUgG-GGCUG- -5'
6868 3' -63.7 NC_001875.2 + 81804 0.66 0.539534
Target:  5'- -cAGCGACgggCCgGCCGCCucgcCgCCCGGCg -3'
miRNA:   3'- uuUCGCUG---GGgCGGCGGcu--G-GGGCUG- -5'
6868 3' -63.7 NC_001875.2 + 49634 0.66 0.539534
Target:  5'- uGGAGCaauACCCCGUguacuCGCCGuacuGCCCgCGGCg -3'
miRNA:   3'- -UUUCGc--UGGGGCG-----GCGGC----UGGG-GCUG- -5'
6868 3' -63.7 NC_001875.2 + 28720 0.66 0.539534
Target:  5'- aAGGGCG-CCgCCGCCGCCaagcGAgCCaCGAUc -3'
miRNA:   3'- -UUUCGCuGG-GGCGGCGG----CUgGG-GCUG- -5'
6868 3' -63.7 NC_001875.2 + 94403 0.66 0.529994
Target:  5'- -cGGCGGCUauuUgGCCGCCGACUgCGcCa -3'
miRNA:   3'- uuUCGCUGG---GgCGGCGGCUGGgGCuG- -5'
6868 3' -63.7 NC_001875.2 + 18313 0.66 0.529994
Target:  5'- ---uUGGCCCCGCCGCCGcuuuaACUacaaUGACu -3'
miRNA:   3'- uuucGCUGGGGCGGCGGC-----UGGg---GCUG- -5'
6868 3' -63.7 NC_001875.2 + 61641 0.66 0.529994
Target:  5'- cGGGCG-CCCagugguCGCCGUCGcCgCCCGGCu -3'
miRNA:   3'- uUUCGCuGGG------GCGGCGGCuG-GGGCUG- -5'
6868 3' -63.7 NC_001875.2 + 37617 0.66 0.529994
Target:  5'- -cGGCGugCUCGCCGaCGACauggggCUCGGCa -3'
miRNA:   3'- uuUCGCugGGGCGGCgGCUG------GGGCUG- -5'
6868 3' -63.7 NC_001875.2 + 82966 0.66 0.520517
Target:  5'- --cGCGuCCUCGgCGaCCGACCCCu-- -3'
miRNA:   3'- uuuCGCuGGGGCgGC-GGCUGGGGcug -5'
6868 3' -63.7 NC_001875.2 + 76000 0.66 0.519573
Target:  5'- cAAGCGugUCCGCCaauCUGGCCCguuucguCGGCg -3'
miRNA:   3'- uUUCGCugGGGCGGc--GGCUGGG-------GCUG- -5'
6868 3' -63.7 NC_001875.2 + 16728 0.66 0.511107
Target:  5'- --cGCGuaucuCCCCGCCGUaauacguguuUGACagCCCGGCg -3'
miRNA:   3'- uuuCGCu----GGGGCGGCG----------GCUG--GGGCUG- -5'
6868 3' -63.7 NC_001875.2 + 95133 0.66 0.501768
Target:  5'- uGGAGCGcGCCaCgGCCGgCGAUCUgGACg -3'
miRNA:   3'- -UUUCGC-UGG-GgCGGCgGCUGGGgCUG- -5'
6868 3' -63.7 NC_001875.2 + 33200 0.66 0.501768
Target:  5'- -cAGCG-CCUCGCUGCCGGCaaacgCgGGCg -3'
miRNA:   3'- uuUCGCuGGGGCGGCGGCUGg----GgCUG- -5'
6868 3' -63.7 NC_001875.2 + 19631 0.66 0.501768
Target:  5'- -cAGUGACCuuGCUGUcaaCGGCCCuuaCGGCg -3'
miRNA:   3'- uuUCGCUGGggCGGCG---GCUGGG---GCUG- -5'
6868 3' -63.7 NC_001875.2 + 74935 0.66 0.492505
Target:  5'- aAAGGCGACaagCCGCUGCugcggcgguaCGACCugCCGGCu -3'
miRNA:   3'- -UUUCGCUGg--GGCGGCG----------GCUGG--GGCUG- -5'
6868 3' -63.7 NC_001875.2 + 56250 0.67 0.483322
Target:  5'- --cGcCGACgCCaUCGCCGACgCCGACg -3'
miRNA:   3'- uuuC-GCUGgGGcGGCGGCUGgGGCUG- -5'
6868 3' -63.7 NC_001875.2 + 17332 0.67 0.483322
Target:  5'- -uGGCGguuGCgCCGCCGCgCGACCgCGuCa -3'
miRNA:   3'- uuUCGC---UGgGGCGGCG-GCUGGgGCuG- -5'
6868 3' -63.7 NC_001875.2 + 73994 0.67 0.474221
Target:  5'- cAAAGCGGCCCgGCgGaCCGguacgagagcACCgCGGCg -3'
miRNA:   3'- -UUUCGCUGGGgCGgC-GGC----------UGGgGCUG- -5'
6868 3' -63.7 NC_001875.2 + 49641 0.67 0.474221
Target:  5'- -cGGCGACacgagCgGCCGCCGGCgCCCa-- -3'
miRNA:   3'- uuUCGCUGg----GgCGGCGGCUG-GGGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.