miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6868 5' -57.9 NC_001875.2 + 68023 0.66 0.800091
Target:  5'- gUUGUcGGACGacgacaUCAGCGAgCUGUccaauuauuuggugGCCCa -3'
miRNA:   3'- -AACA-CCUGC------AGUCGCUgGACGa-------------CGGG- -5'
6868 5' -57.9 NC_001875.2 + 26302 0.66 0.796473
Target:  5'- -cGUGGGCGUCAcgccaauuucGCGACgaGCcgUGUCg -3'
miRNA:   3'- aaCACCUGCAGU----------CGCUGgaCG--ACGGg -5'
6868 5' -57.9 NC_001875.2 + 88721 0.66 0.796473
Target:  5'- -aGUGGAUGcgCGGCGGCUccaacCUGCCg -3'
miRNA:   3'- aaCACCUGCa-GUCGCUGGac---GACGGg -5'
6868 5' -57.9 NC_001875.2 + 42450 0.66 0.787324
Target:  5'- -----uGCGUCAGCGGCC-GCUGCg- -3'
miRNA:   3'- aacaccUGCAGUCGCUGGaCGACGgg -5'
6868 5' -57.9 NC_001875.2 + 20206 0.66 0.787324
Target:  5'- --aUGGugGUCAGUGGCCccgaauccGCcGCUCg -3'
miRNA:   3'- aacACCugCAGUCGCUGGa-------CGaCGGG- -5'
6868 5' -57.9 NC_001875.2 + 124563 0.66 0.786401
Target:  5'- aUGUccGGAucaaacaCGUCGGCGACCcGCgccagGCCg -3'
miRNA:   3'- aACA--CCU-------GCAGUCGCUGGaCGa----CGGg -5'
6868 5' -57.9 NC_001875.2 + 10953 0.66 0.778033
Target:  5'- -cGUGGugGCGUUugugacgcaAGCGGCCUGCaGUCa -3'
miRNA:   3'- aaCACC--UGCAG---------UCGCUGGACGaCGGg -5'
6868 5' -57.9 NC_001875.2 + 37965 0.66 0.778033
Target:  5'- -gGUGuucACG-CGGCGGCCUGCgcGCUCa -3'
miRNA:   3'- aaCACc--UGCaGUCGCUGGACGa-CGGG- -5'
6868 5' -57.9 NC_001875.2 + 98208 0.66 0.77522
Target:  5'- -gGUGaGCGgcugcaacugccCGGCGGCCgacggacUGCUGCCCg -3'
miRNA:   3'- aaCACcUGCa-----------GUCGCUGG-------ACGACGGG- -5'
6868 5' -57.9 NC_001875.2 + 41755 0.66 0.76861
Target:  5'- -gGUGGugcuCGUCGGUcACCggGUUGUCCa -3'
miRNA:   3'- aaCACCu---GCAGUCGcUGGa-CGACGGG- -5'
6868 5' -57.9 NC_001875.2 + 112686 0.66 0.76861
Target:  5'- ---cGaGACGUguguaCAGCGAgCUGCUGgCCa -3'
miRNA:   3'- aacaC-CUGCA-----GUCGCUgGACGACgGG- -5'
6868 5' -57.9 NC_001875.2 + 60853 0.66 0.76861
Target:  5'- gUUGcUGGGCGUUuccaggcucguGGCGGCCcgGCcGUCCa -3'
miRNA:   3'- -AAC-ACCUGCAG-----------UCGCUGGa-CGaCGGG- -5'
6868 5' -57.9 NC_001875.2 + 65792 0.66 0.76861
Target:  5'- ---cGcGGCGUCGGCGcgcgguGCCUGCgcgGCgCCa -3'
miRNA:   3'- aacaC-CUGCAGUCGC------UGGACGa--CG-GG- -5'
6868 5' -57.9 NC_001875.2 + 69639 0.66 0.759064
Target:  5'- -gGUGGACGcCGuCGGCCU-CaGCCCg -3'
miRNA:   3'- aaCACCUGCaGUcGCUGGAcGaCGGG- -5'
6868 5' -57.9 NC_001875.2 + 100893 0.66 0.759064
Target:  5'- -cGUGGGCGcCauGGCGAgaCCUGUgcgGCCa -3'
miRNA:   3'- aaCACCUGCaG--UCGCU--GGACGa--CGGg -5'
6868 5' -57.9 NC_001875.2 + 92618 0.67 0.739639
Target:  5'- -gGUGGGCGcgAGCGGCUUGC-GCgCg -3'
miRNA:   3'- aaCACCUGCagUCGCUGGACGaCGgG- -5'
6868 5' -57.9 NC_001875.2 + 70195 0.67 0.739639
Target:  5'- ---cGGGCGgcgaCGGCGACCacuggGC-GCCCg -3'
miRNA:   3'- aacaCCUGCa---GUCGCUGGa----CGaCGGG- -5'
6868 5' -57.9 NC_001875.2 + 72625 0.67 0.739639
Target:  5'- cUUG-GcGACGUaaucggCGGCGGCCUGCUGUg- -3'
miRNA:   3'- -AACaC-CUGCA------GUCGCUGGACGACGgg -5'
6868 5' -57.9 NC_001875.2 + 97536 0.67 0.739639
Target:  5'- -gGUGGGCGcguUUGGUGGCCaugGCUGUCg -3'
miRNA:   3'- aaCACCUGC---AGUCGCUGGa--CGACGGg -5'
6868 5' -57.9 NC_001875.2 + 15943 0.67 0.739639
Target:  5'- cUGgcgGGGCGcCAGCacuuuGACCgaucCUGCCCg -3'
miRNA:   3'- aACa--CCUGCaGUCG-----CUGGac--GACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.