miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6869 3' -52.9 NC_001875.2 + 13386 0.66 0.960702
Target:  5'- --aCAGCGCGACgCAGcacGCGU-AGCACa -3'
miRNA:   3'- acgGUCGCGCUGgGUU---UGUAcUUGUG- -5'
6869 3' -52.9 NC_001875.2 + 121516 0.66 0.960702
Target:  5'- gGCgCGGgGCGaaacagguGCCCAAACAccAGCGCg -3'
miRNA:   3'- aCG-GUCgCGC--------UGGGUUUGUacUUGUG- -5'
6869 3' -52.9 NC_001875.2 + 55657 0.66 0.960702
Target:  5'- cGCCAuguGcCGCGAUCacuACAUGAACGu -3'
miRNA:   3'- aCGGU---C-GCGCUGGguuUGUACUUGUg -5'
6869 3' -52.9 NC_001875.2 + 40954 0.66 0.960702
Target:  5'- aUGCCcGaCGCGGCCCcGGCc--AGCACg -3'
miRNA:   3'- -ACGGuC-GCGCUGGGuUUGuacUUGUG- -5'
6869 3' -52.9 NC_001875.2 + 12011 0.66 0.960702
Target:  5'- gGCgAGCGCGGCCaaCAAACGcuuUGAAa-- -3'
miRNA:   3'- aCGgUCGCGCUGG--GUUUGU---ACUUgug -5'
6869 3' -52.9 NC_001875.2 + 86665 0.66 0.960702
Target:  5'- gGUCAGgGCGGCCgaCAAAUAguuGCACu -3'
miRNA:   3'- aCGGUCgCGCUGG--GUUUGUacuUGUG- -5'
6869 3' -52.9 NC_001875.2 + 62400 0.66 0.960332
Target:  5'- gGCCGGCGCGcaaACgCCGGcgucaagcacuucGCGUGGaaauuGCGCg -3'
miRNA:   3'- aCGGUCGCGC---UG-GGUU-------------UGUACU-----UGUG- -5'
6869 3' -52.9 NC_001875.2 + 57802 0.66 0.959959
Target:  5'- cGCCaaaaugcAGCGCGAUuugcugagcacaaUCAAuucCAUGAGCGCg -3'
miRNA:   3'- aCGG-------UCGCGCUG-------------GGUUu--GUACUUGUG- -5'
6869 3' -52.9 NC_001875.2 + 127230 0.66 0.959584
Target:  5'- cGCCguacaccguguuugAGCGCGGCCUcuuCGUGcGCAUg -3'
miRNA:   3'- aCGG--------------UCGCGCUGGGuuuGUACuUGUG- -5'
6869 3' -52.9 NC_001875.2 + 65851 0.66 0.958445
Target:  5'- cGCCAGCGCguacgaucaaagaccGcgGCCCAAAUG-GAAUACc -3'
miRNA:   3'- aCGGUCGCG---------------C--UGGGUUUGUaCUUGUG- -5'
6869 3' -52.9 NC_001875.2 + 71141 0.66 0.956891
Target:  5'- gGCCucAGCGCGGCC---GCGuUGGGCAUu -3'
miRNA:   3'- aCGG--UCGCGCUGGguuUGU-ACUUGUG- -5'
6869 3' -52.9 NC_001875.2 + 21269 0.66 0.956891
Target:  5'- cGCgCGGCGCGGCUaCGAGCAc-GACAUu -3'
miRNA:   3'- aCG-GUCGCGCUGG-GUUUGUacUUGUG- -5'
6869 3' -52.9 NC_001875.2 + 32704 0.66 0.956891
Target:  5'- gGCCAGCauauuuGCGACCUggGgAauUGcGACGCg -3'
miRNA:   3'- aCGGUCG------CGCUGGGuuUgU--AC-UUGUG- -5'
6869 3' -52.9 NC_001875.2 + 36142 0.66 0.956891
Target:  5'- -uUCAGCGCG-CCCGAGCcguaGAuuGCGCa -3'
miRNA:   3'- acGGUCGCGCuGGGUUUGua--CU--UGUG- -5'
6869 3' -52.9 NC_001875.2 + 82939 0.66 0.956891
Target:  5'- cUGCCgGGCGCGACgaaaUAacAACGaGGACACa -3'
miRNA:   3'- -ACGG-UCGCGCUGg---GU--UUGUaCUUGUG- -5'
6869 3' -52.9 NC_001875.2 + 5946 0.66 0.956891
Target:  5'- gGUgGGCGCGGCCUc-GCAgu-ACACg -3'
miRNA:   3'- aCGgUCGCGCUGGGuuUGUacuUGUG- -5'
6869 3' -52.9 NC_001875.2 + 80313 0.66 0.956891
Target:  5'- cGCCAGCGCGuCCgagucguugcCAAACA-GAGuuuCGCa -3'
miRNA:   3'- aCGGUCGCGCuGG----------GUUUGUaCUU---GUG- -5'
6869 3' -52.9 NC_001875.2 + 21324 0.66 0.956497
Target:  5'- cGCCAG-GUGGCCCGcggccaccugggcGACGugcuUGAACAg -3'
miRNA:   3'- aCGGUCgCGCUGGGU-------------UUGU----ACUUGUg -5'
6869 3' -52.9 NC_001875.2 + 74788 0.66 0.952836
Target:  5'- aGCUAGCGaCGACaCCu-ACGUGGugGu -3'
miRNA:   3'- aCGGUCGC-GCUG-GGuuUGUACUugUg -5'
6869 3' -52.9 NC_001875.2 + 122079 0.66 0.952836
Target:  5'- cGCguGCGCuuGGCCUcgGAACggcgGUGGACGCu -3'
miRNA:   3'- aCGguCGCG--CUGGG--UUUG----UACUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.