miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6869 5' -57 NC_001875.2 + 98939 0.66 0.828317
Target:  5'- -cGUGC--GCGACgCGCgCGUGUUCAg -3'
miRNA:   3'- aaCACGguUGCUGgGCGaGCACAGGU- -5'
6869 5' -57 NC_001875.2 + 33949 0.66 0.810918
Target:  5'- ---cGCCGACG-CCCGCaaCGUGcCCGu -3'
miRNA:   3'- aacaCGGUUGCuGGGCGa-GCACaGGU- -5'
6869 5' -57 NC_001875.2 + 24278 0.66 0.801965
Target:  5'- cUUGUG-CGACGGCgCCGCgCuUGUCCAu -3'
miRNA:   3'- -AACACgGUUGCUG-GGCGaGcACAGGU- -5'
6869 5' -57 NC_001875.2 + 89769 0.67 0.792854
Target:  5'- aUGgugGUCGGCGACgCGCUCGUG-Ca- -3'
miRNA:   3'- aACa--CGGUUGCUGgGCGAGCACaGgu -5'
6869 5' -57 NC_001875.2 + 130674 0.67 0.791935
Target:  5'- -aGUGCCGcgACGACgccucuggcugguCCGCUugcauguacgcCGUGUCCGc -3'
miRNA:   3'- aaCACGGU--UGCUG-------------GGCGA-----------GCACAGGU- -5'
6869 5' -57 NC_001875.2 + 60652 0.67 0.745257
Target:  5'- cUUGUGCCAuuuUGugUCGUcgUCGUcGUCCAu -3'
miRNA:   3'- -AACACGGUu--GCugGGCG--AGCA-CAGGU- -5'
6869 5' -57 NC_001875.2 + 9129 0.67 0.745257
Target:  5'- ---cGCCGugGACUCGCgcgccaguUCGgUGUCCAc -3'
miRNA:   3'- aacaCGGUugCUGGGCG--------AGC-ACAGGU- -5'
6869 5' -57 NC_001875.2 + 38656 0.68 0.735395
Target:  5'- ---cGCCGuaccGCGugCUGCUCaUGUCCAu -3'
miRNA:   3'- aacaCGGU----UGCugGGCGAGcACAGGU- -5'
6869 5' -57 NC_001875.2 + 100141 0.68 0.705294
Target:  5'- aUGcGCCGGCGGCgCGCaagCGgcgGUCCAc -3'
miRNA:   3'- aACaCGGUUGCUGgGCGa--GCa--CAGGU- -5'
6869 5' -57 NC_001875.2 + 122844 0.68 0.684894
Target:  5'- -gGUGCgccgCGACGuguuucgcugccACCCGUUCGUGUUCAa -3'
miRNA:   3'- aaCACG----GUUGC------------UGGGCGAGCACAGGU- -5'
6869 5' -57 NC_001875.2 + 81337 0.69 0.674623
Target:  5'- -cGUGCCGcGCGGCgCGCUgGUG-CCGc -3'
miRNA:   3'- aaCACGGU-UGCUGgGCGAgCACaGGU- -5'
6869 5' -57 NC_001875.2 + 77624 0.69 0.633269
Target:  5'- gUUGUGCUucaccgucGACGGCCUGCacgUGUGUCUg -3'
miRNA:   3'- -AACACGG--------UUGCUGGGCGa--GCACAGGu -5'
6869 5' -57 NC_001875.2 + 62609 0.7 0.612553
Target:  5'- ---cGCCGuuCGACgCCGC-CGUGUCCGa -3'
miRNA:   3'- aacaCGGUu-GCUG-GGCGaGCACAGGU- -5'
6869 5' -57 NC_001875.2 + 12382 0.7 0.602213
Target:  5'- -gGUGCCAcgGugCCGCUCGUcGUCgGg -3'
miRNA:   3'- aaCACGGUugCugGGCGAGCA-CAGgU- -5'
6869 5' -57 NC_001875.2 + 84632 0.7 0.602213
Target:  5'- -cGUcGCCAAUGaACCCGCgcgUGUGcUCCAg -3'
miRNA:   3'- aaCA-CGGUUGC-UGGGCGa--GCAC-AGGU- -5'
6869 5' -57 NC_001875.2 + 77099 0.7 0.581609
Target:  5'- -gGUGCCGGCGgugcGCCCGCaCGgcuaccUGUCCAc -3'
miRNA:   3'- aaCACGGUUGC----UGGGCGaGC------ACAGGU- -5'
6869 5' -57 NC_001875.2 + 110383 0.71 0.561154
Target:  5'- aUG-GCCGACGGCUCGUgCGUGcCCGu -3'
miRNA:   3'- aACaCGGUUGCUGGGCGaGCACaGGU- -5'
6869 5' -57 NC_001875.2 + 82201 0.74 0.391059
Target:  5'- ---cGCCGGCGG-CCGCUCGUGUCg- -3'
miRNA:   3'- aacaCGGUUGCUgGGCGAGCACAGgu -5'
6869 5' -57 NC_001875.2 + 97914 0.74 0.366084
Target:  5'- ---cGCCGACG-CCCGCUgCGUGUUCGa -3'
miRNA:   3'- aacaCGGUUGCuGGGCGA-GCACAGGU- -5'
6869 5' -57 NC_001875.2 + 7199 1.06 0.002702
Target:  5'- uUUGUGCCAACGACCCGCUCGUGUCCAa -3'
miRNA:   3'- -AACACGGUUGCUGGGCGAGCACAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.