Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
687 | 5' | -52.8 | AC_000018.1 | + | 17340 | 1.13 | 0.000483 |
Target: 5'- aACACUGCCAGCAAAUUGACUCCCGCCg -3' miRNA: 3'- -UGUGACGGUCGUUUAACUGAGGGCGG- -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 33225 | 0.66 | 0.702689 |
Target: 5'- cACACUGCCAaCAcc---GCUCCCccaGCCa -3' miRNA: 3'- -UGUGACGGUcGUuuaacUGAGGG---CGG- -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 16192 | 0.66 | 0.679691 |
Target: 5'- cGCGCggcuucaggUGCCAGCAGc--GGCaggUCCCGCa -3' miRNA: 3'- -UGUG---------ACGGUCGUUuaaCUG---AGGGCGg -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 25571 | 0.67 | 0.656491 |
Target: 5'- cCACUGCCGcuGCAAucuUUGcacaccccaccGCUCCCuuGCCu -3' miRNA: 3'- uGUGACGGU--CGUUu--AAC-----------UGAGGG--CGG- -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 21661 | 0.67 | 0.633188 |
Target: 5'- aGCACUgGCUGGCuuuuGGUUGGaaCCCGCg -3' miRNA: 3'- -UGUGA-CGGUCGu---UUAACUgaGGGCGg -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 16087 | 0.69 | 0.518321 |
Target: 5'- cGCAUcGCCAGgcgccaCAGGgcuACUCCCGCCa -3' miRNA: 3'- -UGUGaCGGUC------GUUUaacUGAGGGCGG- -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 17462 | 0.7 | 0.452316 |
Target: 5'- gACGCUGCCuccuuGCAGAUaUGGCccucacuUgCCGCCu -3' miRNA: 3'- -UGUGACGGu----CGUUUA-ACUG-------AgGGCGG- -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 8522 | 0.68 | 0.582034 |
Target: 5'- cCACUGCCAGCcaugccgccGGgUCCCgaGCCg -3' miRNA: 3'- uGUGACGGUCGuuuaa----CUgAGGG--CGG- -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 17937 | 0.68 | 0.563609 |
Target: 5'- gAUACUGCUccaauugaaGGCGcccccguucAGUUGGCUCgUGCCg -3' miRNA: 3'- -UGUGACGG---------UCGU---------UUAACUGAGgGCGG- -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 26934 | 0.74 | 0.2816 |
Target: 5'- -aGgUGCCaagGGUGAcgUGAUUCCCGCCg -3' miRNA: 3'- ugUgACGG---UCGUUuaACUGAGGGCGG- -5' |
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687 | 5' | -52.8 | AC_000018.1 | + | 22286 | 0.81 | 0.091607 |
Target: 5'- --cCUGCCcGCGGGUcacuuUGACUCCCGCCa -3' miRNA: 3'- uguGACGGuCGUUUA-----ACUGAGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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