miRNA display CGI


Results 1 - 20 of 496 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6870 3' -57.6 NC_001875.2 + 9681 0.66 0.8477
Target:  5'- cGGCGCugucgaaaaaauuguGCGCGUGCAcccaucGUg---GCCGGUc -3'
miRNA:   3'- -CCGCG---------------UGCGCGCGU------CAaaugCGGCCG- -5'
6870 3' -57.6 NC_001875.2 + 104526 0.66 0.844521
Target:  5'- cGGCuuuuGCACGCGCaugGCAaacaagAUGgCCGGCg -3'
miRNA:   3'- -CCG----CGUGCGCG---CGUcaaa--UGC-GGCCG- -5'
6870 3' -57.6 NC_001875.2 + 89575 0.66 0.844521
Target:  5'- uGGCGagaGCGCGCAGUgaaauggACGCUu-- -3'
miRNA:   3'- -CCGCgugCGCGCGUCAaa-----UGCGGccg -5'
6870 3' -57.6 NC_001875.2 + 105604 0.66 0.844521
Target:  5'- aGGCGUACGC-CGCca--UGCcCCGGUa -3'
miRNA:   3'- -CCGCGUGCGcGCGucaaAUGcGGCCG- -5'
6870 3' -57.6 NC_001875.2 + 77650 0.66 0.844521
Target:  5'- uGGUGCcgaacccggGCGaCGCGU--UUUGCGCCaGCg -3'
miRNA:   3'- -CCGCG---------UGC-GCGCGucAAAUGCGGcCG- -5'
6870 3' -57.6 NC_001875.2 + 73597 0.66 0.844521
Target:  5'- uGCuGCACGaGCGCcaacugUUGCGgCGGCg -3'
miRNA:   3'- cCG-CGUGCgCGCGuca---AAUGCgGCCG- -5'
6870 3' -57.6 NC_001875.2 + 93950 0.66 0.844521
Target:  5'- aGUGC-CGCGC-CAGcaagcCGCUGGCg -3'
miRNA:   3'- cCGCGuGCGCGcGUCaaau-GCGGCCG- -5'
6870 3' -57.6 NC_001875.2 + 39306 0.66 0.844521
Target:  5'- --aGUugGUGUGCAGagaaaacGCGCCGGg -3'
miRNA:   3'- ccgCGugCGCGCGUCaaa----UGCGGCCg -5'
6870 3' -57.6 NC_001875.2 + 94576 0.66 0.844521
Target:  5'- uGGCaaGCACGCcccugaaaaaaGCGUAGUUcaugUACGUguagcgCGGCa -3'
miRNA:   3'- -CCG--CGUGCG-----------CGCGUCAA----AUGCG------GCCG- -5'
6870 3' -57.6 NC_001875.2 + 116628 0.66 0.844521
Target:  5'- gGGCGCuuguACuCGCGCAGcaacCGCUGGa -3'
miRNA:   3'- -CCGCG----UGcGCGCGUCaaauGCGGCCg -5'
6870 3' -57.6 NC_001875.2 + 64755 0.66 0.844521
Target:  5'- uGGgGuUGCGCGCGUAGaucucgcGCGCCaGCu -3'
miRNA:   3'- -CCgC-GUGCGCGCGUCaaa----UGCGGcCG- -5'
6870 3' -57.6 NC_001875.2 + 71990 0.66 0.844521
Target:  5'- -uUGCACGCGuCGCuGUaguCGCCgcGGCu -3'
miRNA:   3'- ccGCGUGCGC-GCGuCAaauGCGG--CCG- -5'
6870 3' -57.6 NC_001875.2 + 82990 0.66 0.844521
Target:  5'- cGGCGC-CGCuCGU------CGCCGGCg -3'
miRNA:   3'- -CCGCGuGCGcGCGucaaauGCGGCCG- -5'
6870 3' -57.6 NC_001875.2 + 114552 0.66 0.84292
Target:  5'- cGGCGCucacgACGCuccaGUGCGGcggauugugcGCGUCGGCa -3'
miRNA:   3'- -CCGCG-----UGCG----CGCGUCaaa-------UGCGGCCG- -5'
6870 3' -57.6 NC_001875.2 + 89494 0.66 0.839695
Target:  5'- cGCGC-CGCaaccgcuugggaaagGUGCAGUUgGCGUCGcGCc -3'
miRNA:   3'- cCGCGuGCG---------------CGCGUCAAaUGCGGC-CG- -5'
6870 3' -57.6 NC_001875.2 + 27196 0.66 0.83644
Target:  5'- aGGUgGCACGCGCuaGGaucggccuUGUCGGCg -3'
miRNA:   3'- -CCG-CGUGCGCGcgUCaaau----GCGGCCG- -5'
6870 3' -57.6 NC_001875.2 + 57742 0.66 0.83644
Target:  5'- cGCGCG-GCGCGUAGUcgcgaaACGCCuccuGCa -3'
miRNA:   3'- cCGCGUgCGCGCGUCAaa----UGCGGc---CG- -5'
6870 3' -57.6 NC_001875.2 + 59457 0.66 0.83644
Target:  5'- uGCGUcauguGCGUGCGCAaaaUUGCGCagcgCGGCc -3'
miRNA:   3'- cCGCG-----UGCGCGCGUca-AAUGCG----GCCG- -5'
6870 3' -57.6 NC_001875.2 + 129295 0.66 0.83644
Target:  5'- uGCGCcCGaCGCGCcGUUguucaccgGC-CCGGCg -3'
miRNA:   3'- cCGCGuGC-GCGCGuCAAa-------UGcGGCCG- -5'
6870 3' -57.6 NC_001875.2 + 119414 0.66 0.83644
Target:  5'- cGGCGCGCaCGCaaCGGccugcuugGCGCgCGGCa -3'
miRNA:   3'- -CCGCGUGcGCGc-GUCaaa-----UGCG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.