miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6870 5' -56 NC_001875.2 + 18163 0.66 0.893857
Target:  5'- cGGCGCGCGcgacgccgccacugUGGcGGUGCCGGcggGCGu -3'
miRNA:   3'- uCCGCGCGCa-------------AUU-CCACGGUCag-UGC- -5'
6870 5' -56 NC_001875.2 + 80876 0.66 0.891157
Target:  5'- cGGCGCGCGccaAAGaGUgGCagagcaAGUCGCGc -3'
miRNA:   3'- uCCGCGCGCaa-UUC-CA-CGg-----UCAGUGC- -5'
6870 5' -56 NC_001875.2 + 31982 0.66 0.884246
Target:  5'- uGGCGCGCGUacg---GCCGGUUugugaGCGg -3'
miRNA:   3'- uCCGCGCGCAauuccaCGGUCAG-----UGC- -5'
6870 5' -56 NC_001875.2 + 38460 0.66 0.869744
Target:  5'- cGGCGCGCGcUAGaauuGGUG-CAG-CGCGu -3'
miRNA:   3'- uCCGCGCGCaAUU----CCACgGUCaGUGC- -5'
6870 5' -56 NC_001875.2 + 104644 0.66 0.869744
Target:  5'- aAGGCcgauccuaGCGCGUgccaccUGAcGGUGCUuAGUCGCa -3'
miRNA:   3'- -UCCG--------CGCGCA------AUU-CCACGG-UCAGUGc -5'
6870 5' -56 NC_001875.2 + 90300 0.66 0.862162
Target:  5'- -aGCGCaaGUUGcAGGcGUCGGUCACGa -3'
miRNA:   3'- ucCGCGcgCAAU-UCCaCGGUCAGUGC- -5'
6870 5' -56 NC_001875.2 + 77968 0.66 0.861392
Target:  5'- cGGCGCGCac-GAccaacaggccgacGGUGCCAGcgugCGCGa -3'
miRNA:   3'- uCCGCGCGcaaUU-------------CCACGGUCa---GUGC- -5'
6870 5' -56 NC_001875.2 + 34914 0.66 0.854368
Target:  5'- aAGGCGCGCcaGUUuuuuGGGUGCgGcGUgACa -3'
miRNA:   3'- -UCCGCGCG--CAAu---UCCACGgU-CAgUGc -5'
6870 5' -56 NC_001875.2 + 89807 0.66 0.852784
Target:  5'- cAGcGCGgGCGgcagaucguGGUGCCGGUUaACGg -3'
miRNA:   3'- -UC-CGCgCGCaauu-----CCACGGUCAG-UGC- -5'
6870 5' -56 NC_001875.2 + 113373 0.66 0.851989
Target:  5'- cGGCGCgGCGcaaaaAAGGUGUgccgcggcguugcgUAGUCGCGa -3'
miRNA:   3'- uCCGCG-CGCaa---UUCCACG--------------GUCAGUGC- -5'
6870 5' -56 NC_001875.2 + 65800 0.67 0.846368
Target:  5'- cGGCGCGC-----GGUGCCuG-CGCGg -3'
miRNA:   3'- uCCGCGCGcaauuCCACGGuCaGUGC- -5'
6870 5' -56 NC_001875.2 + 78233 0.67 0.846368
Target:  5'- gAGGCGCGUcagauuGUgcuGGUGCacggGGUCGCu -3'
miRNA:   3'- -UCCGCGCG------CAauuCCACGg---UCAGUGc -5'
6870 5' -56 NC_001875.2 + 98377 0.67 0.841472
Target:  5'- uGGGCGCGCcccgaccacgacGAGGUGgCGGaCGCGg -3'
miRNA:   3'- -UCCGCGCGcaa---------UUCCACgGUCaGUGC- -5'
6870 5' -56 NC_001875.2 + 131767 0.67 0.838168
Target:  5'- cGGGCgGCGCGUcauuGGUGUCGuUCGCc -3'
miRNA:   3'- -UCCG-CGCGCAauu-CCACGGUcAGUGc -5'
6870 5' -56 NC_001875.2 + 48775 0.67 0.838168
Target:  5'- uGGGCuGCGUGUU--GGUGCUguGGUCcuACGg -3'
miRNA:   3'- -UCCG-CGCGCAAuuCCACGG--UCAG--UGC- -5'
6870 5' -56 NC_001875.2 + 63136 0.67 0.829777
Target:  5'- cGGGCGCGCGgcc-GGcGCaCGGgucCACGg -3'
miRNA:   3'- -UCCGCGCGCaauuCCaCG-GUCa--GUGC- -5'
6870 5' -56 NC_001875.2 + 74314 0.67 0.829777
Target:  5'- cGGCGCGC----AGGcGCCGGacagCACGg -3'
miRNA:   3'- uCCGCGCGcaauUCCaCGGUCa---GUGC- -5'
6870 5' -56 NC_001875.2 + 81346 0.67 0.821202
Target:  5'- cGGCGCGCu----GGUGCCGcgcgCACGc -3'
miRNA:   3'- uCCGCGCGcaauuCCACGGUca--GUGC- -5'
6870 5' -56 NC_001875.2 + 13807 0.67 0.821202
Target:  5'- uGGCGCgGCGUUGccGUcGCacuGGUCGCGg -3'
miRNA:   3'- uCCGCG-CGCAAUucCA-CGg--UCAGUGC- -5'
6870 5' -56 NC_001875.2 + 11995 0.67 0.812451
Target:  5'- uGGGCGCGgGUgu-GGUGgCgAG-CGCGg -3'
miRNA:   3'- -UCCGCGCgCAauuCCAC-GgUCaGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.