miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6870 5' -56 NC_001875.2 + 11995 0.67 0.812451
Target:  5'- uGGGCGCGgGUgu-GGUGgCgAG-CGCGg -3'
miRNA:   3'- -UCCGCGCgCAauuCCAC-GgUCaGUGC- -5'
6870 5' -56 NC_001875.2 + 58764 0.68 0.803533
Target:  5'- -uGCGCGCGUgGAGGcaaucCCuGUCGCGg -3'
miRNA:   3'- ucCGCGCGCAaUUCCac---GGuCAGUGC- -5'
6870 5' -56 NC_001875.2 + 58264 0.68 0.785228
Target:  5'- uGGCGCuCGUgucacccGGGGUGUC-GUCGCGa -3'
miRNA:   3'- uCCGCGcGCAa------UUCCACGGuCAGUGC- -5'
6870 5' -56 NC_001875.2 + 81007 0.68 0.756738
Target:  5'- aAGGCGCGCGacgcguuGcUGCCGGUCuACa -3'
miRNA:   3'- -UCCGCGCGCaauu---CcACGGUCAG-UGc -5'
6870 5' -56 NC_001875.2 + 100379 0.69 0.75091
Target:  5'- uGGgGCGCGUUgauguaugauuugucGAGGUGCUuguGUUugGc -3'
miRNA:   3'- uCCgCGCGCAA---------------UUCCACGGu--CAGugC- -5'
6870 5' -56 NC_001875.2 + 37415 0.69 0.747004
Target:  5'- cGGCGCGUGgaaGAGGccgugGCgCAGUCGgCGg -3'
miRNA:   3'- uCCGCGCGCaa-UUCCa----CG-GUCAGU-GC- -5'
6870 5' -56 NC_001875.2 + 113579 0.69 0.707129
Target:  5'- cGGCGCGCcauu-GG-GCCAG-CACGg -3'
miRNA:   3'- uCCGCGCGcaauuCCaCGGUCaGUGC- -5'
6870 5' -56 NC_001875.2 + 45179 0.7 0.696974
Target:  5'- -aGCacCGCGUUGAGGUcGUCGGUCACc -3'
miRNA:   3'- ucCGc-GCGCAAUUCCA-CGGUCAGUGc -5'
6870 5' -56 NC_001875.2 + 11004 0.7 0.676507
Target:  5'- cAGGCGCGCGUgcccauGGuGUGCCuGccCAUGa -3'
miRNA:   3'- -UCCGCGCGCAau----UC-CACGGuCa-GUGC- -5'
6870 5' -56 NC_001875.2 + 99993 0.7 0.676507
Target:  5'- cGGaGCGCuGUUAGcgcGGUGCUGGUCGCa -3'
miRNA:   3'- uCCgCGCG-CAAUU---CCACGGUCAGUGc -5'
6870 5' -56 NC_001875.2 + 41011 0.7 0.655891
Target:  5'- cGGC-CGCGUggucGUGCuCAGUCGCGa -3'
miRNA:   3'- uCCGcGCGCAauucCACG-GUCAGUGC- -5'
6870 5' -56 NC_001875.2 + 41445 0.71 0.604156
Target:  5'- -uGCGCGCGcacAGGcGCCGGUUGCGg -3'
miRNA:   3'- ucCGCGCGCaauUCCaCGGUCAGUGC- -5'
6870 5' -56 NC_001875.2 + 50016 0.72 0.563099
Target:  5'- gGGGCGCGCGU---GGUcGCCGGgcgGCGa -3'
miRNA:   3'- -UCCGCGCGCAauuCCA-CGGUCag-UGC- -5'
6870 5' -56 NC_001875.2 + 84414 0.72 0.552941
Target:  5'- cGGCgGCGCGUauAGGUGCCA-UCGgCGg -3'
miRNA:   3'- uCCG-CGCGCAauUCCACGGUcAGU-GC- -5'
6870 5' -56 NC_001875.2 + 77013 0.72 0.539819
Target:  5'- cGGGCGCGU-UUGAGGUguucgggcucggcaGCCGcGUCGCGg -3'
miRNA:   3'- -UCCGCGCGcAAUUCCA--------------CGGU-CAGUGC- -5'
6870 5' -56 NC_001875.2 + 12199 0.73 0.492391
Target:  5'- uGGGCGCguaaaacGCGUUcAGcGUGCCGGUCAg- -3'
miRNA:   3'- -UCCGCG-------CGCAAuUC-CACGGUCAGUgc -5'
6870 5' -56 NC_001875.2 + 97217 0.76 0.328536
Target:  5'- cAGGUGCGCcau--GGUGCCGGUUACa -3'
miRNA:   3'- -UCCGCGCGcaauuCCACGGUCAGUGc -5'
6870 5' -56 NC_001875.2 + 5546 1.1 0.002118
Target:  5'- gAGGCGCGCGUUAAGGUGCCAGUCACGg -3'
miRNA:   3'- -UCCGCGCGCAAUUCCACGGUCAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.