miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6871 3' -57.9 NC_001875.2 + 32440 0.66 0.795777
Target:  5'- aUGCGCUgcgcgacccgcugGCGCCGCCggugCGGcgCUUUg -3'
miRNA:   3'- -ACGUGAaa-----------CGCGGCGGa---GCCa-GAGGu -5'
6871 3' -57.9 NC_001875.2 + 81299 0.66 0.792138
Target:  5'- aGaCACgc-GCGCCGCCggCGGcgcCUCCu -3'
miRNA:   3'- aC-GUGaaaCGCGGCGGa-GCCa--GAGGu -5'
6871 3' -57.9 NC_001875.2 + 108584 0.66 0.764144
Target:  5'- gGCGCU--GCGCUGCCcgUCGcuguUCUCCGa -3'
miRNA:   3'- aCGUGAaaCGCGGCGG--AGCc---AGAGGU- -5'
6871 3' -57.9 NC_001875.2 + 89305 0.66 0.764144
Target:  5'- cGCAUg--GCGCCGCCaccaugcgcuUCGG-CUCg- -3'
miRNA:   3'- aCGUGaaaCGCGGCGG----------AGCCaGAGgu -5'
6871 3' -57.9 NC_001875.2 + 8409 0.67 0.744874
Target:  5'- cGCGaucUGCGUaaCGCCgCGGUCUUCAa -3'
miRNA:   3'- aCGUgaaACGCG--GCGGaGCCAGAGGU- -5'
6871 3' -57.9 NC_001875.2 + 34300 0.67 0.744874
Target:  5'- gGCACUcgUGCGCguUGCCuUCGGUCa--- -3'
miRNA:   3'- aCGUGAa-ACGCG--GCGG-AGCCAGaggu -5'
6871 3' -57.9 NC_001875.2 + 12176 0.67 0.725205
Target:  5'- aGcCGCUgUGCGCCGCCgccgaGGUUUgCCu -3'
miRNA:   3'- aC-GUGAaACGCGGCGGag---CCAGA-GGu -5'
6871 3' -57.9 NC_001875.2 + 54365 0.67 0.715245
Target:  5'- gGCGCguugggcgaGCGCaCGCCUUGGUCguaaacggugCCAa -3'
miRNA:   3'- aCGUGaaa------CGCG-GCGGAGCCAGa---------GGU- -5'
6871 3' -57.9 NC_001875.2 + 96607 0.67 0.715245
Target:  5'- cGCGCUuuUUGUGCacaaucgcgGCCaggUCGGUUUCCAu -3'
miRNA:   3'- aCGUGA--AACGCGg--------CGG---AGCCAGAGGU- -5'
6871 3' -57.9 NC_001875.2 + 113148 0.67 0.705213
Target:  5'- gUGCACca-GCGCCGCCUUGuacGUUUCg- -3'
miRNA:   3'- -ACGUGaaaCGCGGCGGAGC---CAGAGgu -5'
6871 3' -57.9 NC_001875.2 + 33225 0.68 0.6809
Target:  5'- gGCGCgggcucgccggGCGCCGUUUCGGcgcggcgCUCCGa -3'
miRNA:   3'- aCGUGaaa--------CGCGGCGGAGCCa------GAGGU- -5'
6871 3' -57.9 NC_001875.2 + 76692 0.68 0.67478
Target:  5'- cUGUAUUUguguccgGUGCCGCCgUCGGUCgcgCUg -3'
miRNA:   3'- -ACGUGAAa------CGCGGCGG-AGCCAGa--GGu -5'
6871 3' -57.9 NC_001875.2 + 73059 0.68 0.67478
Target:  5'- gGCGCUguuUUGCGCCGCgaCaGGgauugcCUCCAc -3'
miRNA:   3'- aCGUGA---AACGCGGCGgaG-CCa-----GAGGU- -5'
6871 3' -57.9 NC_001875.2 + 98882 0.68 0.654301
Target:  5'- gUGCGCgg-GCGCCGUUUCGGgaaUCg- -3'
miRNA:   3'- -ACGUGaaaCGCGGCGGAGCCag-AGgu -5'
6871 3' -57.9 NC_001875.2 + 61071 0.68 0.64403
Target:  5'- cUGCACaaaaacUGCGCCGCC-CGcGUCUUg- -3'
miRNA:   3'- -ACGUGaa----ACGCGGCGGaGC-CAGAGgu -5'
6871 3' -57.9 NC_001875.2 + 61622 0.68 0.64403
Target:  5'- gGCugUgucgGCGgCGCCUCGGgcgC-CCAg -3'
miRNA:   3'- aCGugAaa--CGCgGCGGAGCCa--GaGGU- -5'
6871 3' -57.9 NC_001875.2 + 122793 0.69 0.602932
Target:  5'- gGCGCggaaaccgGCGCgGCCggCGG-CUCCAa -3'
miRNA:   3'- aCGUGaaa-----CGCGgCGGa-GCCaGAGGU- -5'
6871 3' -57.9 NC_001875.2 + 129460 0.71 0.502631
Target:  5'- gGCACUggGCGCaGCUgUCGGaCUCCAa -3'
miRNA:   3'- aCGUGAaaCGCGgCGG-AGCCaGAGGU- -5'
6871 3' -57.9 NC_001875.2 + 43422 0.71 0.502631
Target:  5'- uUGCGCgugcGUGCCGuCCUCGGcCaUCCAc -3'
miRNA:   3'- -ACGUGaaa-CGCGGC-GGAGCCaG-AGGU- -5'
6871 3' -57.9 NC_001875.2 + 53000 0.71 0.473891
Target:  5'- aUGCACUUUGCgGCCaGCCugUCGGUgC-CCAc -3'
miRNA:   3'- -ACGUGAAACG-CGG-CGG--AGCCA-GaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.